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Moc11g29460 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g29460
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationchr11:21488532..21488807
RNA-Seq ExpressionMoc11g29460
SyntenyMoc11g29460
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459591.1 PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis melo]2.8e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_011656085.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucumis sativus]8.3e-2886.25Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_022141880.1 succinate dehydrogenase assembly factor 1, mitochondrial [Momordica charantia]9.4e-40100Show/hide
Query:  MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
        MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
Subjt:  MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]4.9e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA QID KNFI+IEYLLRRGNKQLDQLKSP TVR S++N
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

XP_038999431.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Hibiscus syriacus]2.8e-2879.07Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
        KLSG+QKQVLSLYRGFLRAARSK AEDRRQ+ES+V+AEFRRN++Q+D KNF+YIEYLLRRGNKQLDQLKSP T+ LSS+NVS+ ++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS

TrEMBL top hitse value%identityAlignment
A0A0A0KST3 Uncharacterized protein4.0e-2886.25Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VA EFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial1.4e-2887.5Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN
        KLSGLQKQVLSLYR FLRAAR+KS EDR+QMES+VAAEFRRNA QID KNFIYIEYLLRRGNKQLDQLKSPATVRLS+++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMN

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial4.6e-40100Show/hide
Query:  MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
        MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
Subjt:  MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS

A0A6N2M6N5 Uncharacterized protein9.9e-2777.91Show/hide
Query:  GVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS
        G R +LSG+QKQVLSLYRGFLRAARSK  EDRRQ+ES V+AEFRRN+ Q+D KNFIYIEYLLRRG KQL+QL SP TV LSSMNV+
Subjt:  GVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS

A0A7N2LDJ5 Uncharacterized protein8.9e-2880.72Show/hide
Query:  PKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS
        PKLSG+QKQVLSLYRGFLRAARSKSAEDR ++ES+V+ EFRRN+ Q+D KNF+YIEYLLRRG KQLDQLKSP TV LSS+NVS
Subjt:  PKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVS

SwissProt top hitse value%identityAlignment
A6NFY7 Succinate dehydrogenase assembly factor 1, mitochondrial1.2e-0548.53Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  +   + + IEYL RRG +QL  L+S
Subjt:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS

A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial1.6e-0548.53Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS
        S LQ+QVLSLYR  LRA R K   + R     V AEFR++A  +   + + IEYL RRG +QL  L+S
Subjt:  SGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial2.4e-0648.57Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS
        +LS LQ+QVLSLYR  LRA R K   + R     V AEFR++A  +   + + IEYL RRG +QL  L+S
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKS

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial1.2e-0540Show/hide
Query:  SGLQKQVLSLYRGFLRAARSKSAED-RRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSP
        SGLQK VLSLYR FLR +  K  ++    + + +  +FR  A  I  ++   IE LL +G +QL+Q++ P
Subjt:  SGLQKQVLSLYRGFLRAARSKSAED-RRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSP

Q9US02 Succinate dehydrogenase assembly factor 1, mitochondrial7.1e-0641.43Show/hide
Query:  LSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSP
        LSGLQ+QV+  YR  L AA++K      +  + V  EFR+N   I  ++F YIE+LLR G +Q +    P
Subjt:  LSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein2.4e-2566.28Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
        KLSG+QKQVLSLYRGFLRAARS+  EDR+++E +V+ EFR N+ ++D KNF YIEYLLR G KQLDQLKSPA V LSS+ V  +++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein2.4e-2566.28Show/hide
Query:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS
        KLSG+QKQVLSLYRGFLRAARS+  EDR+++E +V+ EFR N+ ++D KNF YIEYLLR G KQLDQLKSPA V LSS+ V  +++
Subjt:  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGAGGCCGAAGCTTTCGGGGCTGCAAAAGCAGGTGCTCAGTCTCTACAGAGGATTTCTACGAGCGGCGCGCTCCAAATCCGCCGAAGATCGGCGGCAG
ATGGAATCGCTCGTCGCCGCCGAGTTTCGCCGGAACGCCGACCAAATCGATCCCAAAAACTTCATCTACATCGAGTACCTCCTCCGCCGAGGTAACAAACAGCTG
GATCAGCTCAAAAGCCCGGCCACTGTTCGATTGTCGTCGATGAATGTCTCAAACGCCAGATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGAGGCCGAAGCTTTCGGGGCTGCAAAAGCAGGTGCTCAGTCTCTACAGAGGATTTCTACGAGCGGCGCGCTCCAAATCCGCCGAAGATCGGCGGCAG
ATGGAATCGCTCGTCGCCGCCGAGTTTCGCCGGAACGCCGACCAAATCGATCCCAAAAACTTCATCTACATCGAGTACCTCCTCCGCCGAGGTAACAAACAGCTG
GATCAGCTCAAAAGCCCGGCCACTGTTCGATTGTCGTCGATGAATGTCTCAAACGCCAGATCCTGA
Protein sequenceShow/hide protein sequence
MGVRPKLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQIDPKNFIYIEYLLRRGNKQLDQLKSPATVRLSSMNVSNARS