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Moc11g30180 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc11g30180
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:22057543..22058061
RNA-Seq ExpressionMoc11g30180
SyntenyMoc11g30180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP64431.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]6.6e-1134.27Show/hide
Query:  DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK
        D  A  ++  SL  + +   I  + + L N S    ++ GT++L+ +  + +V Y+P F YNLISI  LTK  +  +++F D  CV QD +T +MI R+ 
Subjt:  DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK

Query:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNT---FDIWHNR
        ++NCLY L   +    VP+ H  +++ +A + T   FD+WH R
Subjt:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNT---FDIWHNR

XP_017426279.1 PREDICTED: uncharacterized protein LOC108334859 [Vigna angularis]8.6e-1134.29Show/hide
Query:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK
        D  A+ ++++S  LY S   I  + V L N       Y GT+K+   + I+NV Y+P F++NLIS+S LT    + Q++F DN C  QDK + RMI    
Subjt:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK

Query:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR
         ++ LY L+ S            ++T++      DIWH R
Subjt:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR

XP_019420691.1 PREDICTED: uncharacterized protein LOC109330875 [Lupinus angustifolius]1.9e-1338.28Show/hide
Query:  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSS
        SLY +  +I  +++ L N +  T  + GT+  ++++Y+TNV Y+PTF++NL+SIS LT   L   + F++N C  QD  + +MI  ++LR  LY L  SS
Subjt:  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSS

Query:  LTGDVPSLHYDVHTSMAVSNTFDIWHNR
              S H +++TS   SN   IWH+R
Subjt:  LTGDVPSLHYDVHTSMAVSNTFDIWHNR

XP_019438974.1 PREDICTED: uncharacterized protein LOC109344676 [Lupinus angustifolius]2.1e-1236.72Show/hide
Query:  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSS
        +LYQ+  +I  +++ L N    T  + GT+  + ++Y+T+V ++PTF++NLISIS LT   L   + F  N C  Q+  +  MI  +KL+ CLY L  SS
Subjt:  SLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSS

Query:  LTGDVPSLHYDVHTSMAVSNTFDIWHNR
           +  S H +V+T    SN   +WH+R
Subjt:  LTGDVPSLHYDVHTSMAVSNTFDIWHNR

XP_022143573.1 uncharacterized protein LOC111013441 [Momordica charantia]5.8e-1536.76Show/hide
Query:  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNC
        SA+      L+  + KIS V V L NK  F VEY G V+L+  + I  V YIP F++NLIS++ L ++   + + F +++C+ QDKS S+ I++ +L + 
Subjt:  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNC

Query:  LYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR
        LY L++   T +  S    +  S     +FD+WHNR
Subjt:  LYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR

TrEMBL top hitse value%identityAlignment
A0A151TBK6 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1134.27Show/hide
Query:  DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK
        D  A  ++  SL  + +   I  + + L N S    ++ GT++L+ +  + +V Y+P F YNLISI  LTK  +  +++F D  CV QD +T +MI R+ 
Subjt:  DDSANSYMAASL--YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK

Query:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNT---FDIWHNR
        ++NCLY L   +    VP+ H  +++ +A + T   FD+WH R
Subjt:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNT---FDIWHNR

A0A2N9FB24 Integrase catalytic domain-containing protein1.0e-0932.67Show/hide
Query:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK
        D  A  +M  S   + S+  +  V+V L N  N +V + GT+ LT  + ++NV Y+ +F +NLIS+S LT   L   + F  N C  +D    +MI   K
Subjt:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK

Query:  LRNCLYFLEDSSLTGDVPSLH----------YDVHTSMAVSNTFDIWHNR
         RN LY L+ S+    VP+            Y + +    +N+F IWH R
Subjt:  LRNCLYFLEDSSLTGDVPSLH----------YDVHTSMAVSNTFDIWHNR

A0A396GD37 Putative RNA-directed DNA polymerase1.3e-0930.2Show/hide
Query:  YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLT
        + ++ KI  ++V   N +     Y G++  +  +Y+ NV ++P FH ++ISIS LTK  L+  ++F+ NSC+ QD ST R I   +L N LY L  +   
Subjt:  YQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNCLYFLEDSSLT

Query:  GDVP-SLHYDV----------------------HTSMAVSNTFDIWHNR
           P S+ + V                      H+  +  N FD+WH R
Subjt:  GDVP-SLHYDV----------------------HTSMAVSNTFDIWHNR

A0A6J1CR17 uncharacterized protein LOC1110134412.8e-1536.76Show/hide
Query:  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNC
        SA+      L+  + KIS V V L NK  F VEY G V+L+  + I  V YIP F++NLIS++ L ++   + + F +++C+ QDKS S+ I++ +L + 
Subjt:  SANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSKLRNC

Query:  LYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR
        LY L++   T +  S    +  S     +FD+WHNR
Subjt:  LYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR

Q2HT49 Integrase, catalytic region7.9e-1033.33Show/hide
Query:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK
        D  AN+++ +S   + S  KI    V L NK+   V+Y G V  +S +Y+TNV Y PTF+ NLIS+S + K  L   + F+ +SC+ Q+ ST RMI   +
Subjt:  DDSANSYMAAS--LYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERSK

Query:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFD----------IWHNR
          + LY L  S+ +   PS  ++ +  ++ +N             +WH R
Subjt:  LRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFD----------IWHNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACAT
AATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATT
TCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGT
AAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTT
GATATTTGGCACAATCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACAT
AATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATT
TCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGT
AAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTT
GATATTTGGCACAATCGTTAA
Protein sequenceShow/hide protein sequence
MNASKNTSDDSANSYMAASLYQSLAKISLVVVGLHNKSNFTVEYDGTVKLTSEIYITNVFYIPTFHYNLISISGLTKEFLDVQILFADNSCVAQDKSTSRMIERS
KLRNCLYFLEDSSLTGDVPSLHYDVHTSMAVSNTFDIWHNR