CuGenDBv2

Gene ID	Moc11g30730
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:22444123..22449998
RNA-Seq Expression	Moc11g30730
Synteny	Moc11g30730
Gene Ontology terms	GO:0005986 - sucrose biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0016311 - dephosphorylation (biological process) GO:0000287 - magnesium ion binding (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0050307 - sucrose-phosphate phosphatase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

6.0e-51

58.59

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ T++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYG D+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]

3.2e-52

59.09

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E+W+KL+ LY+ KSLSN+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E+KD E L  R R++KK++  ++  SRSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

8.4e-53

59.6

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.5e-52

59.09

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + +Q KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E+W+KL+ LYL KSLSN+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E KD E L  R R++KK++  ++  SRSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

6.4e-53

59.6

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

2.9e-51

58.59

Show/hide

Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ T++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYG D+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

A0A5A7U459 Putative polyprotein

1.5e-52

59.09

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E+W+KL+ LY+ KSLSN+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E+KD E L  R R++KK++  ++  SRSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

A0A5A7UB25 Putative gag-pol polyprotein

4.1e-53

59.6

Show/hide

Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-52

59.09

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Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + +Q KVAK LD+ +  P  + E EK +M ++ +ST++LYLSD VLR VD+ATT  E+W+KL+ LYL KSLSN+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP+ YRE+K AIKYGRD+L+M I+L+ LK + LEIK E KD E L  R R++KK++  ++  SRSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

A0A5D3DNU1 Putative gag-pol polyprotein

3.1e-53

59.6

Show/hide

Query:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD
        I  + VQ KVAK LD+ +  P  + E EK +M ++A+ST++LYLSD VLR VD+ATT+ E+W+KL+ LYL KSL N+IY+KEKFF ++MD SK L+ NLD
Subjt:  ITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLD

Query:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK
        EF KI +DL NIGEKMSDENQAVILLNSLP++YRE+K AIKYGRD+L M IVL+ LK + LEIK E+KD E L  R R++KK++  ++   RSKS+ K
Subjt:  EFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKKNYSKQKGKSRSKSRAK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.5e-09

29.71

Show/hide

Query:  FCITPLEVQQKVAKALDD--PKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLD
        F I  L  +Q V K +D   P       K+ E+      A ST+I YLSD+ L       T+ +I + LD +Y  KSL++++ L+++  S ++     L 
Subjt:  FCITPLEVQQKVAKALDD--PKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLD

Query:  ANLDEFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIK-YGRDNLDMEIVLNVLKLKELEIKLEKKDS
        ++   F+++  +L   G K+ + ++   LL +LP  Y  I TAI+    +NL +  V N L  +E++IK +  D+
Subjt:  ANLDEFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIK-YGRDNLDMEIVLNVLKLKELEIKLEKKDS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-24

33.5

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Query:  LEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFN
        L +QQ + K LD     P  MK E+  ++ + A S + L+LSD+V+  + D  T+  IW +L+ LY+ K+L+N++YLK++ ++  M       ++L+ FN
Subjt:  LEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNEIYLKEKFFSFRMDPSKPLDANLDEFN

Query:  KIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK-----KKNYSKQKGKSRSKSRAK
         +   LAN+G K+ +E++A++LLNSLP SY  + T I +G+  ++++ V + L L E   K  +   +AL T  R +       NY +   + +SK+R+K
Subjt:  KIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAK-----KKNYSKQKGKSRSKSRAK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGTTGTATAAGCGAATAAGTGCATTTAGGAGAAAGACTACAGTTGGCACTGAGGTTGAGGGTGAGGTCTCTAGTTTGAGAACGGGCTTGGTAATCACAAAT
GGAGCATTGGTTGGTGTCAAGAATAAAGTAGAAGTCGTCGGTGCAATGGAAGTAGAGCATTGGTTGGTGCCAAGAAGATGTGTTGATAAATTACTGTTGGTGCAA
TTAGAACTGAGCCTTGGTGGTGGTGGTTTGCTAATACGAGGGACACTGCCGCTGCCGGCAAAAGAGAACACAGTGGAGAGAAAGAAAAACTTTGTGGGTTCTTTC
TTATGTGTGAGTACCGAAAGTGAGAGAGAGGAAGAGGGTGATGAGTGTTGCAAAGTTCCTTGGGTATTTTCCTCATTATTTTGTATCACTCCTCTTGAAGTGCAA
CAAAAGGTTGCTAAAGCTCTTGATGATCCGAAGAATTACCCCACTGAAATGAAGGAAGAAGAGAAGGAAGAAATGCTTGATTTAGCCTTTAGTACACTGATTTTG
TATTTGTCGGATAATGTTTTACGACAGGTTGATGATGCCACCACATCCTTAGAGATATGGCAAAAGTTAGATAAGTTATATCTTGTCAAGTCTTTGTCGAACGAG
ATATATCTCAAGGAGAAATTCTTTAGTTTTAGGATGGATCCTTCAAAACCATTAGATGCAAATTTAGATGAGTTTAATAAAATTTTCCTTGATTTAGCCAACATT
GGTGAGAAAATGTCTGATGAAAATCAAGCGGTAATTTTGTTAAATTCACTGCCCGATTCATATAGAGAAATCAAGACAGCAATTAAGTACGGAAGAGACAACTTG
GATATGGAGATAGTTCTGAATGTTTTGAAATTAAAAGAACTTGAGATCAAGCTGGAGAAGAAGGACAGTGAAGCACTGTATACTCGGGATAGAGCAAAGAAGAAA
AATTACAGCAAGCAGAAAGGGAAATCTCGGTCAAAATCGAGAGCGAAAGAGGAAACATCTCAAGGCTTAGATACATTTGAGATTGAGGTAGAGCCCACTTCAATC
CAAAGGCAAGTCACTTCTAACAACATACCAAACACATCAACAAGTACTGAACCAGAAGTTAGTACTGAGCAGATTGATGAGGATGATGGCAGTGATCAAGAATCA
GAAGCACAGGGGATTGAGTAG

mRNA sequence

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Protein sequence

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MKLYKRISAFRRKTTVGTEVEGEVSSLRTGLVITNGALVGVKNKVEVVGAMEVEHWLVPRRCVDKLLLVQLELSLGGGGLLIRGTLPLPAKENTVERKKNFVGSF
LCVSTESEREEEGDECCKVPWVFSSLFCITPLEVQQKVAKALDDPKNYPTEMKEEEKEEMLDLAFSTLILYLSDNVLRQVDDATTSLEIWQKLDKLYLVKSLSNE
IYLKEKFFSFRMDPSKPLDANLDEFNKIFLDLANIGEKMSDENQAVILLNSLPDSYREIKTAIKYGRDNLDMEIVLNVLKLKELEIKLEKKDSEALYTRDRAKKK
NYSKQKGKSRSKSRAKEETSQGLDTFEIEVEPTSIQRQVTSNNIPNTSTSTEPEVSTEQIDEDDGSDQESEAQGIE

Moc11g30730 (gene) of Bitter gourd (OHB3-1) v2 genome