CuGenDBv2

Gene ID	Moc11g30800
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr11:22479795..22487675
RNA-Seq Expression	Moc11g30800
Synteny	Moc11g30800
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0009987 - cellular process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW19921.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.5e-24

32.13

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN------PRTNIEEPIDYS
        F+LAL+ H+QM   + E  +  I NH QA+F+QR   R++    +       P  R     +S+ +    +  RN  +  +N          I+E    +
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN------PRTNIEEPIDYS

Query:  STQTLINQESIRVLTSDSELPLAPNNSD-DFYIELPIELGVNSLNELSS
        S     N +++++  + + + L     D +FY++      + +  E SS
Subjt:  STQTLINQESIRVLTSDSELPLAPNNSD-DFYIELPIELGVNSLNELSS

RVW43526.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.0e-24

38.17

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTN
        F+LAL+ H+QM   + E  +  I NH QA+F+QR   R+     +       P  R     +S+ +       +N Y    NPR +
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTN

RVW82530.1 hypothetical protein CK203_046287 [Vitis vinifera]

2.6e-24

36.81

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G + A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN
        F+LAL+ H+QM   + E  +  I NH Q +F+QR   R++    +       P  R     +S+ ++   +  RN  +  +N
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN

RVW93768.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

8.1e-26

32.13

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTNIEEPIDYSSTQTLI
        F+LAL+ H+QM  ++ E  +  I NH QA+F+QR   R+     +       P  R     +S+ +       +N +    NPR +     DYS     I
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTNIEEPIDYSSTQTLI

Query:  NQESIRVLTSDSELPLAPNNSDDFYIELPIELGVNSLNELSSEVQGSGE
         Q    +   + E         +FY++      + +  E+   +   G+
Subjt:  NQESIRVLTSDSELPLAPNNSDDFYIELPIELGVNSLNELSSEVQGSGE

XP_022154021.1 uncharacterized protein LOC111021379 [Momordica charantia]

2.4e-33

60.45

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        ++EG E A +VW SLEE+LL++TKEN+IH+NE+L  LKKGSLS++EYI++FK L D+L AMK+ LD++ KVF  ARGLG  Y +F+ AMLSKA YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQR
        F+LALKAHDQ      E ER    N NQAFFS R
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQR

TrEMBL top hits

e value

%identity

Alignment

A0A438C9J9 Retrovirus-related Pol polyprotein from transposon RE1

7.4e-25

32.13

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN------PRTNIEEPIDYS
        F+LAL+ H+QM   + E  +  I NH QA+F+QR   R++    +       P  R     +S+ +    +  RN  +  +N          I+E    +
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN------PRTNIEEPIDYS

Query:  STQTLINQESIRVLTSDSELPLAPNNSD-DFYIELPIELGVNSLNELSS
        S     N +++++  + + + L     D +FY++      + +  E SS
Subjt:  STQTLINQESIRVLTSDSELPLAPNNSD-DFYIELPIELGVNSLNELSS

A0A438E6Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.7e-25

38.17

Show/hide

Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTN
        F+LAL+ H+QM   + E  +  I NH QA+F+QR   R+     +       P  R     +S+ +       +N Y    NPR +
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTN

A0A438HDK5 Uncharacterized protein

1.3e-24

36.81

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G + A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN
        F+LAL+ H+QM   + E  +  I NH Q +F+QR   R++    +       P  R     +S+ ++   +  RN  +  +N
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSN

A0A438IAM2 Retrovirus-related Pol polyprotein from transposon RE1

3.9e-26

32.13

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        +++G E A+ VW SL E LL +TKE ++ +   L  +KKG+ SL+EY++ FK + D LAA+++ + ++ KVF  A+GLG+ YM+F++AMLSK  YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTNIEEPIDYSSTQTLI
        F+LAL+ H+QM  ++ E  +  I NH QA+F+QR   R+     +       P  R     +S+ +       +N +    NPR +     DYS     I
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTNIEEPIDYSSTQTLI

Query:  NQESIRVLTSDSELPLAPNNSDDFYIELPIELGVNSLNELSSEVQGSGE
         Q    +   + E         +FY++      + +  E+   +   G+
Subjt:  NQESIRVLTSDSELPLAPNNSDDFYIELPIELGVNSLNELSSEVQGSGE

A0A6J1DMG5 uncharacterized protein LOC111021379

1.1e-33

60.45

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Query:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ
        ++EG E A +VW SLEE+LL++TKEN+IH+NE+L  LKKGSLS++EYI++FK L D+L AMK+ LD++ KVF  ARGLG  Y +F+ AMLSKA YP++NQ
Subjt:  MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQ

Query:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQR
        F+LALKAHDQ      E ER    N NQAFFS R
Subjt:  FILALKAHDQMNQLKVEGERVGIPNHNQAFFSQR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGAAGGAAAGGAGAATGCTCACCAAGTTTGGACTTCTTTAGAAGAAATCTTATTATCTATTACAAAGGAGAACAAGATTCATGTCAATGAATCTCTACACTGTTT
GAAGAAGGGAAGTCTATCATTGGAAGAATACATAAAACGATTCAAGGCTTTAAGTGACAAGTTAGCAGCCATGAAAAGGCTCCTTGATAATATGATAAAAGTCTTCACTT
CGGCTAGAGGATTGGGAAGTGACTACATGAATTTTAAAATAGCAATGTTGTCAAAGGCACGTTACCCTACATTCAATCAATTCATTCTTGCACTAAAAGCCCATGATCAA
ATGAACCAACTTAAAGTTGAAGGAGAAAGAGTTGGAATTCCTAATCACAATCAAGCTTTCTTCAGTCAAAGAAAAGGATATCGTGATGAAGAAATGTGGAACATGCCTAG
CTCCAGCACACTAAACCCGCATCATAGAGCAATGGTGGAACAATCCTCTAACACAAAATACACCTTTGAAAATCACATCAGAAATAGGTACGATGATCTGAGCAATCCAA
GAACTAATATTGAAGAGCCTATTGACTACTCCTCCACTCAAACTCTCATAAATCAAGAGTCTATAAGGGTGTTGACAAGTGATAGTGAGTTGCCACTTGCTCCCAATAAT
AGTGATGACTTTTATATTGAGTTGCCCATTGAATTAGGTGTCAATTCTCTAAATGAGTTATCAAGTGAAGTGCAGGGAAGTGGTGAATCTCAATGCTTAGATTTTGAAGA
ATGGCATGACCCATCTAGCATGGCAAATCAAACACCTCAAGATGACTATATAGATGTCAGACAACAGAAAATGGAGGAAACTACTTACACTAGAAAACATACTCATTTGG
ATGACAATGAAACTTCCTCAAACCTACTGATAGACAATAATATTGCAGATCAATCACAAAATCCTTTCCAAGGTAGAAATAATACTTCAAGTCTTGAGATGCAATCACCA
GACAAGCAACAAATTGAGGAAAACAATGTATCTCAAATTAAAGTCTCTAATCCTCACCAAAACTCTACCCAAAGAGCTGAAATACAATGGCAATATTAA

mRNA sequence

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Protein sequence

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MIEGKENAHQVWTSLEEILLSITKENKIHVNESLHCLKKGSLSLEEYIKRFKALSDKLAAMKRLLDNMIKVFTSARGLGSDYMNFKIAMLSKARYPTFNQFILALKAHDQ
MNQLKVEGERVGIPNHNQAFFSQRKGYRDEEMWNMPSSSTLNPHHRAMVEQSSNTKYTFENHIRNRYDDLSNPRTNIEEPIDYSSTQTLINQESIRVLTSDSELPLAPNN
SDDFYIELPIELGVNSLNELSSEVQGSGESQCLDFEEWHDPSSMANQTPQDDYIDVRQQKMEETTYTRKHTHLDDNETSSNLLIDNNIADQSQNPFQGRNNTSSLEMQSP
DKQQIEENNVSQIKVSNPHQNSTQRAEIQWQY

Moc11g30800 (gene) of Bitter gourd (OHB3-1) v2 genome