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Moctig00246g080 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoctig00246g080
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein PAF1 homolog
Genome locationtig00000246_pilon:54326..54892
RNA-Seq ExpressionMoctig00246g080
SyntenyMoctig00246g080
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]1.9e-7074.73Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        +M+PHGYVNFQQLP  NIPQ+SE RAENPQQLPPMIN                        PASVHPYGMPNPSTLFPSL PYYGMGHWV   NYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        RVPPPPQL FLERGPQ PQLNPNILSTF+MG LKPLEPPRMP  TNMPMD G EHGGEQEKSHS RL+P V IGQKRKGKEVM DP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

XP_022156936.1 uncharacterized protein LOC111023763 [Momordica charantia]4.6e-7779.46Show/hide
Query:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMINP------------------------ASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR
        MAPHGYVNFQQLP LNIPQNSE RAENPQQLPPMINP                        ASVHPYGMPNPSTLFPS PPYYGMGHWV   NYGMISPR
Subjt:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMINP------------------------ASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR

Query:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPN LSTF+MGHLKPLEPPRMPI TNMPMDAGVEHGGEQEKSH QRL+P +SIGQKRKGKEVMTDP
Subjt:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

XP_022157800.1 protein PAF1 homolog [Momordica charantia]1.8e-7376.34Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        MM+PHGYVNFQQLPILNIPQNSE RAE+PQQ PPMIN                        PASVHPYGMPNPSTLFPSLPPYY MG+WV  QNYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        RVPPPPQLPFLERGPQ PQLNPNILSTF+MG LKPLEPP MPI  N+PMD GVEHGGEQEKSH+QRL+P VSIGQKRKGKEV+TDP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

XP_022158357.1 uncharacterized protein LOC111024860 [Momordica charantia]3.6e-7476.34Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        +M+PHGYVNFQQLP LNIPQNSE RAENPQQLPPMIN                        PASVHPYGMPNPSTLFPSLPPYYGMGHW+  QNYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        +VPPPPQLPFLERGPQ PQL+PNILST++MG LKPLEPPRMP  TNMPMDAG EHGGEQEK HS RL+P VSIGQKRKGKEVMTDP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

XP_022158852.1 uncharacterized protein LOC111025316 [Momordica charantia]1.4e-7377.84Show/hide
Query:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR
        MAPHGYVNFQ LP LNIPQNSE RAE+PQQLPPMIN                        PASVHPYGMPNPSTLFPSLPPYYGMGHWV   NYGMISPR
Subjt:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR

Query:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPNILSTF+MGHLKPLEP RM I TNMPMD G EHGGEQEKSHSQRL+P VSIGQKRKGKEVM+DP
Subjt:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

TrEMBL top hitse value%identityAlignment
A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201109.0e-7174.73Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        +M+PHGYVNFQQLP  NIPQ+SE RAENPQQLPPMIN                        PASVHPYGMPNPSTLFPSL PYYGMGHWV   NYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        RVPPPPQL FLERGPQ PQLNPNILSTF+MG LKPLEPPRMP  TNMPMD G EHGGEQEKSHS RL+P V IGQKRKGKEVM DP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

A0A6J1DU32 protein PAF1 homolog8.7e-7476.34Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        MM+PHGYVNFQQLPILNIPQNSE RAE+PQQ PPMIN                        PASVHPYGMPNPSTLFPSLPPYY MG+WV  QNYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        RVPPPPQLPFLERGPQ PQLNPNILSTF+MG LKPLEPP MPI  N+PMD GVEHGGEQEKSH+QRL+P VSIGQKRKGKEV+TDP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

A0A6J1DWG3 uncharacterized protein LOC1110237632.2e-7779.46Show/hide
Query:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMINP------------------------ASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR
        MAPHGYVNFQQLP LNIPQNSE RAENPQQLPPMINP                        ASVHPYGMPNPSTLFPS PPYYGMGHWV   NYGMISPR
Subjt:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMINP------------------------ASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR

Query:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPN LSTF+MGHLKPLEPPRMPI TNMPMDAGVEHGGEQEKSH QRL+P +SIGQKRKGKEVMTDP
Subjt:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

A0A6J1DX11 uncharacterized protein LOC1110248601.8e-7476.34Show/hide
Query:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP
        +M+PHGYVNFQQLP LNIPQNSE RAENPQQLPPMIN                        PASVHPYGMPNPSTLFPSLPPYYGMGHW+  QNYGMISP
Subjt:  MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISP

Query:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        +VPPPPQLPFLERGPQ PQL+PNILST++MG LKPLEPPRMP  TNMPMDAG EHGGEQEK HS RL+P VSIGQKRKGKEVMTDP
Subjt:  RVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

A0A6J1DY94 uncharacterized protein LOC1110253166.7e-7477.84Show/hide
Query:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR
        MAPHGYVNFQ LP LNIPQNSE RAE+PQQLPPMIN                        PASVHPYGMPNPSTLFPSLPPYYGMGHWV   NYGMISPR
Subjt:  MAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMIN------------------------PASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPR

Query:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP
        VPPPPQLPFLERGPQ PQLNPNILSTF+MGHLKPLEP RM I TNMPMD G EHGGEQEKSHSQRL+P VSIGQKRKGKEVM+DP
Subjt:  VPPPPQLPFLERGPQVPQLNPNILSTFDMGHLKPLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCTCCACATGGTTATGTAAATTTTCAGCAGCTACCCATACTTAATATACCTCAAAACAGTGAGTTAAGGGCTGAAAATCCTCAACAACTTCCTCCAATGATCAA
TCCGGCTAGTGTTCATCCTTACGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTATTATGGAATGGGTCATTGGGTAACTCTACAAAATTATGGGATGA
TTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGTACCACAATTGAACCCTAACATATTGAGTACCTTCGACATGGGACACCTAAAA
CCCTTAGAGCCTCCTAGGATGCCAATCCTAACCAATATGCCAATGGATGCAGGAGTTGAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCAGAGGCTAAAGCCTAGAGT
TTCGATAGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCCCAGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCTCCACATGGTTATGTAAATTTTCAGCAGCTACCCATACTTAATATACCTCAAAACAGTGAGTTAAGGGCTGAAAATCCTCAACAACTTCCTCCAATGATCAA
TCCGGCTAGTGTTCATCCTTACGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTATTATGGAATGGGTCATTGGGTAACTCTACAAAATTATGGGATGA
TTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGTACCACAATTGAACCCTAACATATTGAGTACCTTCGACATGGGACACCTAAAA
CCCTTAGAGCCTCCTAGGATGCCAATCCTAACCAATATGCCAATGGATGCAGGAGTTGAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCAGAGGCTAAAGCCTAGAGT
TTCGATAGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCCCAGAAATTGA
Protein sequenceShow/hide protein sequence
MMAPHGYVNFQQLPILNIPQNSELRAENPQQLPPMINPASVHPYGMPNPSTLFPSLPPYYGMGHWVTLQNYGMISPRVPPPPQLPFLERGPQVPQLNPNILSTFDMGHLK
PLEPPRMPILTNMPMDAGVEHGGEQEKSHSQRLKPRVSIGQKRKGKEVMTDPRN