CuGenDBv2

Gene ID	Moctig00544g140
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase catalytic domain-containing protein
Genome location	tig00000544_pilon:63975..65318
RNA-Seq Expression	Moctig00544g140
Synteny	Moctig00544g140
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0009507 - chloroplast (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR022546 - Uncharacterised protein family Ycf68

Homology

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GenBank top hits

e value

%identity

Alignment

CAA7013176.1 unnamed protein product [Microthlaspi erraticum]

1.9e-72

94.59

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH
        EMLRGVENKRRSGDSRIGEAVEC TLDGESPVAESITSL SDPSSMGH
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH

CAD5336140.1 unnamed protein product [Arabidopsis thaliana]

2.9e-73

80.65

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
        EMLRGVENKRRSGDSRIG AV                    D +S G    RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

CAD5336141.1 unnamed protein product [Arabidopsis thaliana]

2.9e-73

80.65

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
        EMLRGVENKRRSGDSRIG AV                    D +S G    RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

CAD5336145.1 unnamed protein product [Arabidopsis thaliana]

2.9e-73

80.65

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
        EMLRGVENKRRSGDSRIG AV                    D +S G    RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHG-SRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

KAG7528872.1 hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica]

1.9e-72

94.59

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH
        EMLRGVENKRRSGDSRIGEAVEC TLDGESPVAESITSL SDPSSMGH
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH

TrEMBL top hits

e value

%identity

Alignment

A0A2N9F5N4 Uncharacterized protein ycf68

6.2e-90

72.22

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------
        EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH                                                    
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------

Query:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
                       GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

A0A2N9HJU4 Uncharacterized protein ycf68

6.2e-90

72.22

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------
        EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH                                                    
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------

Query:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
                       GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

A0A2N9HJZ2 Uncharacterized protein ycf68

6.2e-90

72.22

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------
        EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH                                                    
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------

Query:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
                       GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

A0A2N9HP93 Uncharacterized protein ycf68

6.2e-90

72.22

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------
        EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH                                                    
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------

Query:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
                       GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

A0A2N9I678 Uncharacterized protein ycf68

6.2e-90

72.22

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Query:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD
        MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGVVSD
Subjt:  MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSD

Query:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------
        EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH                                                    
Subjt:  EMLRGVENKRRSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGH----------------------------------------------------

Query:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV
                       GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKE+
Subjt:  ---------------GSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G07706.1 unknown protein

2.6e-08

56.45

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Query:  SETMGDKLHRR----------EGNSPDHQLRPLNDRSVIKEVGVQRQPGGL------PRSSH
        SET G ++ R           EGNSPDHQLRP N RSVIKEVGVQRQP  L      PRS H
Subjt:  SETMGDKLHRR----------EGNSPDHQLRPLNDRSVIKEVGVQRQPGGL------PRSSH

Sequences

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CDS sequence

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ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATA
TGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAG
TTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGT
AGATCCGGAGATTCCCGAATAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGG
GCACGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGG
AGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA

mRNA sequence

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Protein sequence

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MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKR
RSGDSRIGEAVECCTLDGESPVAESITSLRSDPSSMGHGSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP

Moctig00544g140 (gene) of Bitter gourd (OHB3-1) v2 genome