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PI0000059 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000059
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr01:18882621..18882944
RNA-Seq ExpressionPI0000059
SyntenyPI0000059
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036837.1 E3 ubiquitin-protein ligase RGLG2 [Cucumis melo var. makuwa]5.0e-1665Show/hide
Query:  EEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMS
        +EE D +GE  QNDDGV EVRDDKEVA+ SLN MA LSSPQT+ VK L++G EVV L+ GG T+N ID+ELV S +FS S
Subjt:  EEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMS

KAA0039528.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-1145.71Show/hide
Query:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG
        +Q+ E++S  EE D V  EI    +    +    E+ANLSLNS+ GLSSP+T+ +K  IRG E+VVLI GG T+N I +E+V  LK S+   + YG+VLG
Subjt:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG

Query:  AEGSI
          G +
Subjt:  AEGSI

KAE8650876.1 hypothetical protein Csa_002497, partial [Cucumis sativus]1.2e-1249.52Show/hide
Query:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG
        +Q+GE++S  EE D V  EI  N  G  E+  + E+ANLSLNS+ GL+S +T+ +K  IRG EVVVLI GG T+N I EE+V  LK S+   + YG+VLG
Subjt:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG

Query:  AEGSI
          G +
Subjt:  AEGSI

XP_024030016.1 uncharacterized protein LOC112094120 [Morus notabilis]4.1e-1043.82Show/hide
Query:  KGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGAEGSI
        K E+ +  +  AE  DD+EV  LSLNS+ GL+SP+TM +K ++RG EV VLI  G T N I  +LV  ++ ++    DYG+V+G   S+
Subjt:  KGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGAEGSI

XP_031737572.1 uncharacterized protein LOC116402461 [Cucumis sativus]1.2e-1249.52Show/hide
Query:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG
        +Q+GE++S  EE D V  EI  N  G  E+  + E+ANLSLNS+ GL+S +T+ +K  IRG EVVVLI GG T+N I EE+V  LK S+   + YG+VLG
Subjt:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG

Query:  AEGSI
          G +
Subjt:  AEGSI

TrEMBL top hitse value%identityAlignment
A0A087GH17 Uncharacterized protein1.9e-0836.27Show/hide
Query:  MFIQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMV
        + +QD E  + W EE++   E+          R   +VA LSLNSM G+SSP+T+ ++  IRG  +VV+I  G ++N I E++V  L  + ++T  YG++
Subjt:  MFIQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMV

Query:  LG
         G
Subjt:  LG

A0A5A7T5F6 E3 ubiquitin-protein ligase RGLG22.4e-1665Show/hide
Query:  EEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMS
        +EE D +GE  QNDDGV EVRDDKEVA+ SLN MA LSSPQT+ VK L++G EVV L+ GG T+N ID+ELV S +FS S
Subjt:  EEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMS

A0A5A7T7D3 Ty3-gypsy retrotransposon protein4.9e-0941Show/hide
Query:  EDDVKGEITQNDD------GVAEVRDD-KEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGAEGSI
        ED+ + EI + D+       V E++++ K   +LS+NS+ GLS+P+TM VK  I+G EVVVLI  G T+N I +++VA+LK       +YG++LG+  +I
Subjt:  EDDVKGEITQNDD------GVAEVRDD-KEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGAEGSI

A0A5A7UES8 Ty3-gypsy retroelement transposase5.4e-0844Show/hide
Query:  VAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGA
        V  V +D+ V  LS+NS+ GLS+P T+ V+  I+G EVV+LI  G T+N I E+ V+ L+ +   T  YG++LG+
Subjt:  VAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGA

A0A5D3CTU6 Ty3-gypsy retrotransposon protein6.2e-1245.71Show/hide
Query:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG
        +Q+ E++S  EE D V  EI    +    +    E+ANLSLNS+ GLSSP+T+ +K  IRG E+VVLI GG T+N I +E+V  LK S+   + YG+VLG
Subjt:  IQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLG

Query:  AEGSI
          G +
Subjt:  AEGSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATCCAAGACGGAGAAGAAATGTCGTCGTGGGAAGAGGAAGACGATGTTAAAGGGGAGATAACTCAAAATGACGACGGTGTTGCGGAGGTAAGGGATGACAAAGA
AGTGGCTAATTTGTCCTTGAACTCGATGGCGGGATTAAGCTCTCCACAGACGATGAACGTCAAGAGGCTAATTAGAGGACATGAGGTGGTGGTGTTGATACACGGAGGCG
TAACCAACAACTTAATTGATGAAGAACTGGTGGCCTCGCTTAAATTTTCGATGTCAAATACGGAAGATTACGGGATGGTCCTCGGAGCAGAGGGATCTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTATCCAAGACGGAGAAGAAATGTCGTCGTGGGAAGAGGAAGACGATGTTAAAGGGGAGATAACTCAAAATGACGACGGTGTTGCGGAGGTAAGGGATGACAAAGA
AGTGGCTAATTTGTCCTTGAACTCGATGGCGGGATTAAGCTCTCCACAGACGATGAACGTCAAGAGGCTAATTAGAGGACATGAGGTGGTGGTGTTGATACACGGAGGCG
TAACCAACAACTTAATTGATGAAGAACTGGTGGCCTCGCTTAAATTTTCGATGTCAAATACGGAAGATTACGGGATGGTCCTCGGAGCAGAGGGATCTATTTGA
Protein sequenceShow/hide protein sequence
MFIQDGEEMSSWEEEDDVKGEITQNDDGVAEVRDDKEVANLSLNSMAGLSSPQTMNVKRLIRGHEVVVLIHGGVTNNLIDEELVASLKFSMSNTEDYGMVLGAEGSI