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PI0000083 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000083
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L18
Genome locationchr08:1136577..1136921
RNA-Seq ExpressionPI0000083
SyntenyPI0000083
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5094.74Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_004144339.1 uncharacterized protein LOC101221233 [Cucumis sativus]1.9e-5098.25Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_008462699.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]1.5e-5098.25Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]5.7e-5094.74Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]1.3e-4993.86Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L0Z6 Uncharacterized protein9.4e-5198.25Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A1S3CHJ0 50S ribosomal protein L187.2e-5198.25Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A5D3DYC1 50S ribosomal protein L187.2e-5198.25Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620252.7e-5094.74Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679406.1e-5093.86Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETATVASAASSQEK LRSSMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVIDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.7e-0944.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK
        L +H T + V AQVI +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK

A8IAP8 50S ribosomal protein L185.9e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK
        L +H T+K + AQ+I         AASS EK LRSS+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK

B6EPU1 50S ribosomal protein L181.7e-0945.65Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK
        L +H T +   AQVI    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK

B7VLE1 50S ribosomal protein L181.3e-0943.48Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK
        L +H T + V AQVI +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK

P52863 50S ribosomal protein L187.8e-1044.57Show/hide
Query:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK
        L +H T + V AQVI S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein4.2e-1134.65Show/hide
Query:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAG
        R   Y++P++L + F+ KF+ A+V+H  T+ V S A++  + +R+++ S  D  A   IGKL+ ER +   + AV    ++ +R  GK+  VID+++E G
Subjt:  RLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAG

Query:  I
        I
Subjt:  I

AT3G22450.1 Ribosomal L18p/L5e family protein5.9e-0529.17Show/hide
Query:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKL
        P+ L ++ + + V A VIH  T+ V + A S  K ++  + S R+VAA A +G +L +R L   I  V    ++  +  GK++ V+ ++ + G+ +
Subjt:  PYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKL

AT3G45020.1 Ribosomal L18p/L5e family protein3.5e-0530.63Show/hide
Query:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQRYHG-----KVKAVI
        LK YVL++  + K+++A V+      + + AS+ E  +++S+E  R  +  AAA +G++L  RL ++G+       +   +K+E    G     KV AVI
Subjt:  LKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQRYHG-----KVKAVI

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein2.9e-4479.82Show/hide
Query:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK
        MVIPP ++PPRL  YLKPYVLKMHFTNKFV AQVIHS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQRYHGKVK
Subjt:  MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVK

Query:  AVIDSVREAGIKLL
        AVIDSVREAG+KLL
Subjt:  AVIDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTTTGTGAGTGCCCAGGTGATCCACTC
TGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAAGAGAAGGCATTGCGATCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGAAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGT
ATTAAGTTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAATAAGTTTGTGAGTGCCCAGGTGATCCACTC
TGAAACAGCCACTGTTGCTTCGGCTGCAAGCTCACAAGAGAAGGCATTGCGATCGAGCATGGAGTCGACAAGGGATGTGGCTGCTGCTGCAAAGATTGGAAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGT
ATTAAGTTGCTTTGA
Protein sequenceShow/hide protein sequence
MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAG
IKLL