CuGenDBv2

Gene ID	PI0000107
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	chr04:25977728..25978018
RNA-Seq Expression	PI0000107
Synteny	PI0000107
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031986.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.2e-26

62.5

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL
        + F E YG+D +PT+ KSIP +L K+ED+F WP  L P R+I+ HIHLK  T+ VNVRP+ YAY+Q EE ++LVDEM+ASG+I+PSTSPYSSPVLL
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL

KAA0041188.1 ty3-gypsy retroelement transposase [Cucumis melo var. makuwa]

3.7e-26

63.92

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        +T  E Y  + IPT+ KSIPALL K+EDVF+WPEEL P+  +  HIHLK  T+PVNVRP+ YA++Q EE++K VDEML SGVI PS +PYSSPVLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

KAA0043595.1 putative mitochondrial protein [Cucumis melo var. makuwa]

8.2e-26

65.98

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MT  E YGVDE+ T+ +SI  +L KF DVF+WPE+L  RRSI+ HIHLK +T+P+NVRP  YAY+Q EE+DK V EML+SGVIRPS SPYSS VLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

KAA0065442.1 peroxidase 64 [Cucumis melo var. makuwa]

2.1e-29

73.2

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MTF E Y VDEIPTV +SIP LL KFE+ FDW EELLPR SI+ HIHLK   DP+NVRP+ YAY+Q EE++KLVDEMLA GVIR STSPYSS VLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

KAA0066630.1 Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa]

1.6e-29

72.16

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MTF E YGVD+I TV KSIP LL ++EDVFDWPEEL P+  I+ HIHLKN T+P+NVR + YAY+Q EE++KLVDEMLASGVIR STSPY SPVLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPQ8 Transposon Ty3-I Gag-Pol polyprotein

1.0e-26

62.5

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL
        + F E YG+D +PT+ KSIP +L K+ED+F WP  L P R+I+ HIHLK  T+ VNVRP+ YAY+Q EE ++LVDEM+ASG+I+PSTSPYSSPVLL
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLL

A0A5A7TE05 Ty3-gypsy retroelement transposase

1.8e-26

63.92

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        +T  E Y  + IPT+ KSIPALL K+EDVF+WPEEL P+  +  HIHLK  T+PVNVRP+ YA++Q EE++K VDEML SGVI PS +PYSSPVLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSI-KHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

A0A5A7TQA2 Putative mitochondrial protein

4.0e-26

65.98

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MT  E YGVDE+ T+ +SI  +L KF DVF+WPE+L  RRSI+ HIHLK +T+P+NVRP  YAY+Q EE+DK V EML+SGVIRPS SPYSS VLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

A0A5A7VAW7 Peroxidase 64

1.0e-29

73.2

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MTF E Y VDEIPTV +SIP LL KFE+ FDW EELLPR SI+ HIHLK   DP+NVRP+ YAY+Q EE++KLVDEMLA GVIR STSPYSS VLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

A0A5A7VHH6 Retrovirus-related Pol polyprotein from transposon opus

7.7e-30

72.16

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Query:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        MTF E YGVD+I TV KSIP LL ++EDVFDWPEEL P+  I+ HIHLKN T+P+NVR + YAY+Q EE++KLVDEMLASGVIR STSPY SPVLLV
Subjt:  MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIK-HIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

SwissProt top hits

e value

%identity

Alignment

P20825 Retrovirus-related Pol polyprotein from transposon 297

7.0e-04

32.91

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Query:  IPALLTKFEDV-FDWPEELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        +  LL KF ++ +   E+L    +IKH+       P+  + +  A     E++  V EML  G+IR S SPY+SP  +V
Subjt:  IPALLTKFEDV-FDWPEELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.7e-06

32.47

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Query:  ALLTKFEDVFDWP-EELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV
        +LL +F  +F+ P   +    ++K     N  DP+  + + Y      E+++ +DE+L  G+IRPS SPY+SP+ +V
Subjt:  ALLTKFEDVFDWP-EELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTTTTGTAGAGTCCTATGGAGTTGATGAGATACCTACAGTCGCTAAATCGATTCCAGCACTGTTGACTAAGTTTGAGGATGTGTTTGATTGGCCAGAGGAACTCCT
ACCAAGAAGGAGTATTAAACATATCCATTTGAAAAACGAGACTGATCCAGTCAATGTACGACCACATCATTATGCATATAAACAAAATGAAGAAATAGACAAGTTAGTGG
ATGAGATGTTAGCTTCAGGGGTTATTCGCCCTAGTACGAGTCCATACTCGAGCCCTGTCCTTTTGGTGTAG

mRNA sequence

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Protein sequence

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MTFVESYGVDEIPTVAKSIPALLTKFEDVFDWPEELLPRRSIKHIHLKNETDPVNVRPHHYAYKQNEEIDKLVDEMLASGVIRPSTSPYSSPVLLV

PI0000107 (gene) of Melon (PI 482460) v1 genome