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PI0000159 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000159
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:16672225..16672821
RNA-Seq ExpressionPI0000159
SyntenyPI0000159
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.5e-6367.2Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQR+SLIQFGT EPI+VRFQQK++T +SQNK+E +ED+GE W V+  +K RQ +S+Q   HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKF----LLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        ++S+TL++F     L+DHP+E+LEV ACH  +IVE DNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLS+T KEEENQC
Subjt:  QRSLTLSKF----LLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

KAA0050543.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-6368.45Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQR+SLIQFGT EPI+VRFQQKI+T +SQNK+E +ED GE W V+  +K RQ +S+Q K HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCL
        +RS+TL++FL    L+DHPEE+LEV ACH  +IVEVDNN+ S+EE+DNS EIKQRT+VFDR KP T RS VFQRLSM  K+EE+QCL
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-6369.73Show/hide
Query:  DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQ
        DQRKSLIQFGT  PI+V FQQ+IVTI+SQNK+   +DDGEGW ++TRQKGRQPNSIQK+L FHQK+ KG+ISHKKKG+RNKK W  KP++ +D+D LQ +
Subjt:  DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQ

Query:  RSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
         ++TL++FL    L+DHPEE+LEV ACHA +IVEVDNN+ S +EV+NS EI QRT+VFDRIKPST RS VFQRLSMT KEEENQC
Subjt:  RSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.9e-6368.28Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQ++SLIQFGT EPI+VR QQKI+T +SQNK+E +ED+GE W V+  +K RQ NS+Q K HFHQKH KGNISHKKKG+RNKK WK KP++ +++D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        +RS+TL++FL    L+DH EEVLEV ACH  +IVEVDNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLSM  KEE+NQC
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

TYK20938.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-6469.89Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQRKSLIQFGT +PI+VRFQQKI+T +SQNK+E +ED+GE W V+  +K RQ +SIQ K HFHQK+ KGNISH KKG+RNKK WK KPM+ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        +RS+TL+KFL    L+DHPEE+LEV ACH  +IVEVDNN+ S+EEVDNS EIKQRT+VF+RIKP T RS VFQRLSM  KEEENQC
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein1.7e-6367.2Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQR+SLIQFGT EPI+VRFQQK++T +SQNK+E +ED+GE W V+  +K RQ +S+Q   HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKF----LLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        ++S+TL++F     L+DHP+E+LEV ACH  +IVE DNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLS+T KEEENQC
Subjt:  QRSLTLSKF----LLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

A0A5A7U3T4 Retrotransposon gag protein1.3e-6368.45Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQR+SLIQFGT EPI+VRFQQKI+T +SQNK+E +ED GE W V+  +K RQ +S+Q K HFHQKH KGNISHKKKG+RNKK WKSKP++ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCL
        +RS+TL++FL    L+DHPEE+LEV ACH  +IVEVDNN+ S+EE+DNS EIKQRT+VFDR KP T RS VFQRLSM  K+EE+QCL
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCL

A0A5A7V7A0 Retrotransposon gag protein3.7e-6369.73Show/hide
Query:  DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQ
        DQRKSLIQFGT  PI+V FQQ+IVTI+SQNK+   +DDGEGW ++TRQKGRQPNSIQK+L FHQK+ KG+ISHKKKG+RNKK W  KP++ +D+D LQ +
Subjt:  DQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQ

Query:  RSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
         ++TL++FL    L+DHPEE+LEV ACHA +IVEVDNN+ S +EV+NS EI QRT+VFDRIKPST RS VFQRLSMT KEEENQC
Subjt:  RSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

A0A5D3CCI8 Retrotransposon gag protein2.9e-6368.28Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQ++SLIQFGT EPI+VR QQKI+T +SQNK+E +ED+GE W V+  +K RQ NS+Q K HFHQKH KGNISHKKKG+RNKK WK KP++ +++D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        +RS+TL++FL    L+DH EEVLEV ACH  +IVEVDNN+ S+EEVDNS EIKQRT+VFDRIKP T RS VFQRLSM  KEE+NQC
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

A0A5D3DBR8 Retrotransposon gag protein1.2e-6469.89Show/hide
Query:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP
        YDQRKSLIQFGT +PI+VRFQQKI+T +SQNK+E +ED+GE W V+  +K RQ +SIQ K HFHQK+ KGNISH KKG+RNKK WK KPM+ +D+D LQP
Subjt:  YDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQP

Query:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC
        +RS+TL+KFL    L+DHPEE+LEV ACH  +IVEVDNN+ S+EEVDNS EIKQRT+VF+RIKP T RS VFQRLSM  KEEENQC
Subjt:  QRSLTLSKFL----LDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACCTTATGATCAAAGGAAAAGCTTGATTCAGTTTGGAACTCTCGAACCTATAGTTGTTCGATTCCAACAAAAGATCGTGACGATAGATTCCCAAAACAAAGACGA
GACTGTTGAGGATGATGGCGAAGGATGGACAGTCATGACTCGTCAAAAAGGGAGACAACCAAATTCCATTCAAAAGAAGCTGCACTTCCATCAAAAGCATGGAAAAGGAA
ACATCTCTCATAAAAAGAAGGGAAAAAGAAATAAGAAGACGTGGAAGTCTAAGCCTATGCAGGAGGAAGACGATGATCTCCTACAACCTCAACGATCGCTAACTTTGTCA
AAGTTCCTCCTTGATGATCATCCAGAGGAAGTTTTAGAAGTCATTGCATGTCATGCTATCAACATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAGAAGTCGACAA
TTCAAAGGAAATCAAGCAAAGGACTACTGTCTTCGATCGTATCAAGCCTTCAACTGCTCGATCTCCAGTCTTTCAAAGGTTGAGTATGACCATGAAAGAAGAAGAAAACC
AATGTCTAATGCTACTTCCACTCGAACTTCAACTTTCAAAAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAACCTTATGATCAAAGGAAAAGCTTGATTCAGTTTGGAACTCTCGAACCTATAGTTGTTCGATTCCAACAAAAGATCGTGACGATAGATTCCCAAAACAAAGACGA
GACTGTTGAGGATGATGGCGAAGGATGGACAGTCATGACTCGTCAAAAAGGGAGACAACCAAATTCCATTCAAAAGAAGCTGCACTTCCATCAAAAGCATGGAAAAGGAA
ACATCTCTCATAAAAAGAAGGGAAAAAGAAATAAGAAGACGTGGAAGTCTAAGCCTATGCAGGAGGAAGACGATGATCTCCTACAACCTCAACGATCGCTAACTTTGTCA
AAGTTCCTCCTTGATGATCATCCAGAGGAAGTTTTAGAAGTCATTGCATGTCATGCTATCAACATAGTAGAAGTCGACAATAATCATGCATCTTTTGAAGAAGTCGACAA
TTCAAAGGAAATCAAGCAAAGGACTACTGTCTTCGATCGTATCAAGCCTTCAACTGCTCGATCTCCAGTCTTTCAAAGGTTGAGTATGACCATGAAAGAAGAAGAAAACC
AATGTCTAATGCTACTTCCACTCGAACTTCAACTTTCAAAAGGCTAA
Protein sequenceShow/hide protein sequence
MQPYDQRKSLIQFGTLEPIVVRFQQKIVTIDSQNKDETVEDDGEGWTVMTRQKGRQPNSIQKKLHFHQKHGKGNISHKKKGKRNKKTWKSKPMQEEDDDLLQPQRSLTLS
KFLLDDHPEEVLEVIACHAINIVEVDNNHASFEEVDNSKEIKQRTTVFDRIKPSTARSPVFQRLSMTMKEEENQCLMLLPLELQLSKG