CuGenDBv2

Gene ID	PI0000166
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr06:7018603..7019772
RNA-Seq Expression	PI0000166
Synteny	PI0000166
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]

4.5e-49

68.59

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR+EE+SEKAD IDAV G ++GLPI+ELL RVD LE  T     INYERG SSS  AAH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]

7.8e-01

58.7

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Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK
        Q VQ+ +SAYAAAERLFDL+ D+QD  R  S SP R+ +   SSPK
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK

KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]

7.7e-49

68.59

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        M ++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEK D IDAV G ++GLPI+ELL RVD LE  T     +NYERG SSS  AAH+KE++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMIN MSEDFR  LDVVRNEIADV+AR+NLTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

KAA0067252.1 uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa]

6.4e-03

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Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE
        Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ +   SSPKA GE
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE

KAA0067252.1 uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa]

1.0e-48

51.65

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Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS+A   GKA  DRL E+EEQMLYL E PD++R+LES  EE+SEKA  IDAV G ++GLPI+ELL+RVDTLE  T     INYER  SSS  AAH++E +
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ-------------------------------------GVQEFS
         ELDSSQK+++EMINDMSEDFRA LDVVRNEIADV+AR++LT+  +  + P  G  +                                      VQ  +
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ-------------------------------------GVQEFS

Query:  SAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG
        SAYAA ERLFDL+ DSQD  R  S SP R+ +  +SSPKA G
Subjt:  SAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG

TYK01453.1 uncharacterized protein E5676_scaffold772G00460 [Cucumis melo var. makuwa]

1.3e-48

67.95

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLPIKELL RVD LE  T     INYERG SSS   AH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

TYK01453.1 uncharacterized protein E5676_scaffold772G00460 [Cucumis melo var. makuwa]

4.9e-03

63.27

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Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG
        Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ D   SSPKA G
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG

TYK04141.1 uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa]

1.3e-48

67.95

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Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLPIKELL RVD LE  T     INYERG SSS   AH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUC2 Retrotrans_gag domain-containing protein

2.4e-03

63.27

Show/hide

Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG
        Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ D   SSPKA G
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG

A0A5A7VFV0 Retrotrans_gag domain-containing protein

3.1e-03

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Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE
        Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ +   SSPKA GE
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE

A0A5A7VFV0 Retrotrans_gag domain-containing protein

4.9e-49

51.65

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS+A   GKA  DRL E+EEQMLYL E PD++R+LES  EE+SEKA  IDAV G ++GLPI+ELL+RVDTLE  T     INYER  SSS  AAH++E +
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ-------------------------------------GVQEFS
         ELDSSQK+++EMINDMSEDFRA LDVVRNEIADV+AR++LT+  +  + P  G  +                                      VQ  +
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ-------------------------------------GVQEFS

Query:  SAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG
        SAYAA ERLFDL+ DSQD  R  S SP R+ +  +SSPKA G
Subjt:  SAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG

A0A5D3BQN3 Retrotrans_gag domain-containing protein

2.2e-49

68.59

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR+EE+SEKAD IDAV G ++GLPI+ELL RVD LE  T     INYERG SSS  AAH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3BQN3 Retrotrans_gag domain-containing protein

3.8e-01

58.7

Show/hide

Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK
        Q VQ+ +SAYAAAERLFDL+ D+QD  R  S SP R+ +   SSPK
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK

A0A5D3BQN3 Retrotrans_gag domain-containing protein

3.7e-49

68.59

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        M ++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEK D IDAV G ++GLPI+ELL RVD LE  T     +NYERG SSS  AAH+KE++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
         ELDSSQK+++EMIN MSEDFR  LDVVRNEIADV+AR+NLTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3CCE2 Retrotrans_gag domain-containing protein

6.3e-49

67.95

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLPIKELL RVD LE  T     INYERG SSS   AH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

A0A5D3CCE2 Retrotrans_gag domain-containing protein

2.4e-03

63.27

Show/hide

Query:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG
        Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ D   SSPKA G
Subjt:  QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG

A0A5D3CCE2 Retrotrans_gag domain-containing protein

6.3e-49

67.95

Show/hide

Query:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI
        MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLPIKELL RVD LE  T     INYERG SSS   AH++E++
Subjt:  MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQI

Query:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI
        GELD++QK+++EMIN MSEDFR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Subjt:  GELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTACAGCGAAACAGACGGGTAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGTTAGAATTTCCAGACACCGTCCGCTTCTTGGAAAG
TCGGATTGAAGAAGTTTCTGAGAAAGCTGACGCTATTGATGCGGTGACCGGTTGCCTCGACGGTTTACCTATAAAAGAGTTGTTAATAAGAGTTGACACTTTAGAGGCAA
AGACTACGAGAATAAACTACGAGCGTGGGAGCAGCTCGTCGAGCCCTGCTGCCCACGTAAAGGAACAGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATG
ATAAACGACATGTCAGAGGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGC
TCCAACTGGAGGAGCTATACAAGGGGTCCAAGAATTCTCGTCGGCGTACGCAGCGGCGGAGCGACTGTTTGATCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAA
GTCCCTCACCTGAAAGAGACGAGGATGATTGTGTAAGTTCTCCGAAGGCCGAAGGGGAGATAAACGATCTGGTGGTGGTCGTAGGCTCTTCCAATCAAACCCCGGGAGCC
CGGGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAA

mRNA sequence

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Protein sequence

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MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTTRINYERGSSSSSPAAHVKEQIGELDSSQKSIVEM
INDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGEINDLVVVVGSSNQTPGA
RAKTEPPETSQSSPCLFHM

PI0000166 (gene) of Melon (PI 482460) v1 genome