; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000213 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000213
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionzinc finger protein GIS2
Genome locationchr01:5756177..5761601
RNA-Seq ExpressionPI0000213
SyntenyPI0000213
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148537.1 zinc finger protein GIS2 [Cucumis sativus]3.8e-11199.47Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

XP_008448055.1 PREDICTED: zinc finger protein GIS2 [Cucumis melo]2.3e-111100Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

XP_022136056.1 zinc finger protein GIS2 [Momordica charantia]2.1e-10997.37Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

XP_028765678.1 zinc finger protein GIS2 [Prosopis alba]6.1e-10996.32Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+DRKIRSDRFSYRDAPYRR+SRRGFSRDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA++CPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+LGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

XP_038887879.1 zinc finger protein GIS2 [Benincasa hispida]3.8e-11199.47Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

TrEMBL top hitse value%identityAlignment
A0A0A0K138 Uncharacterized protein1.9e-11199.47Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

A0A1S3BIU7 zinc finger protein GIS21.1e-111100Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

A0A371II40 DNA-binding protein HEXBP1.5e-10895.26Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+DRKIRSDRFSYRDAPYRR+SRRGFSRDNLCKNCKRPGH+ARECPNVAICHNCGLPGHIASECTTKSLCWNC+EPGHMAS+CPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRAR+CTAPP+PPGDLRLCNNCYKQGHIAA+CTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPK+NVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

A0A6J1C2F8 zinc finger protein GIS21.0e-10997.37Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

A0A6J1I6P4 zinc finger protein GIS2-like1.5e-10897.37Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDR

SwissProt top hitse value%identityAlignment
O42395 Cellular nucleic acid-binding protein7.7e-2236.69Show/hide
Query:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMASSC-----PNEGICHTCGKAGHRA
        N C  C R GH+ARECP                          IC+ CG  GH+A +C  +    C+NC   GH+A  C       E  C+ CGK GH A
Subjt:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMASSC-----PNEGICHTCGKAGHRA

Query:  RDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        RDC        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  RDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

O65639 Cold shock protein 14.7e-1937.13Show/hide
Query:  CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR-----
        C NC   GHFAR+C +                C+ CG  GH+A +CT KS+  N  + G +     N+G C+TCG  GH ARDCT   +  G++R     
Subjt:  CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR-----

Query:  --LCNNCYKQGHIAADCTNE----KACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARQC
           C +C   GHIA DC  +    + C  C  +GHLARDC         ND  C  C   GH AR+C
Subjt:  --LCNNCYKQGHIAADCTNE----KACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARQC

P36627 Cellular nucleic acid-binding protein homolog2.2e-2138.31Show/hide
Query:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECT---TKSLCWNCREPGHMASSCPNE------GICHTCGKAGHRARDCTAPPLPPGDL----RLCNNC
        C NC   GH AREC   +IC+NC   GH ASECT    +  C+ C   GH+   CP+         C+ CG+ GH ARDC       G      R   NC
Subjt:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECT---TKSLCWNCREPGHMASSCPNE------GICHTCGKAGHRARDCTAPPLPPGDL----RLCNNC

Query:  Y---KQGHIAADCTNEKACNNCRKTGHLARDC---PNDPICNLCNVSGHVARQC
        Y     GH A DCT    C +C K GH + +C    +  +C  CN  GH+A  C
Subjt:  Y---KQGHIAADCTNEKACNNCRKTGHLARDC---PNDPICNLCNVSGHVARQC

P53849 Zinc finger protein GIS29.7e-2535.57Show/hide
Query:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIA
        C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GH+ S C  +  C  C + GH +R+C  P       ++ C  C    H+A
Subjt:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIA

Query:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS
         DC  E       C  C + GH++RDC ND +C  CN +GH+++ CPK+
Subjt:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS

Q04832 DNA-binding protein HEXBP7.0e-2332.18Show/hide
Query:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMASSCPNEG--------ICHTCGKAGHRARDCT----
        C+NC + GH+ARECP            C  CG  GH++ EC  ++         C+ C E GHM+  CPN           C+ CG+ GH +RDC     
Subjt:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMASSCPNEG--------ICHTCGKAGHRARDCT----

Query:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNV
                      A     GD R C  C   GHI+ DC N         ++ C  C   GH++RDCPN         D  C  C  SGH++R+CP +  
Subjt:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNV

Query:  LG
         G
Subjt:  LG

Arabidopsis top hitse value%identityAlignment
AT1G75560.1 zinc knuckle (CCHC-type) family protein9.8e-8171.35Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN
        EGICH+CGK+GHRARDC+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN

AT1G75560.2 zinc knuckle (CCHC-type) family protein9.8e-8171.35Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN
        EGICH+CGK+GHRARDC+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN

AT2G17870.1 cold shock domain protein 32.3e-1328.57Show/hide
Query:  CKNCKRPGHFARECP-----------------NVAICHNCGLPGHIASECTTKS------------LCWNCREPGHMASSC-----------------PN
        C NC   GH A++C                      C+ CG  GH A +C                 C++C E GH+A  C                   
Subjt:  CKNCKRPGHFARECP-----------------NVAICHNCGLPGHIASECTTKS------------LCWNCREPGHMASSC-----------------PN

Query:  EGICHTCGKAGHRARDC--TAPPLPPGDLRLCNNCYKQGHIAADCTNE---------KACNNCRKTGHLARDCP-----------NDPICNLCNVSGHVA
        +G C+ CG  GH ARDC         G    C  C   GHIA  CT++         +AC  C  TGHLARDC                C +C   GH A
Subjt:  EGICHTCGKAGHRARDC--TAPPLPPGDLRLCNNCYKQGHIAADCTNE---------KACNNCRKTGHLARDCP-----------NDPICNLCNVSGHVA

Query:  RQC
        R+C
Subjt:  RQC

AT3G43590.1 zinc knuckle (CCHC-type) family protein7.9e-1427.32Show/hide
Query:  SRDNLCKNCKRPGHFARECPNV-------AICHNCGLPGH--------IASECTTKSLCWNCREPGHMASSCPNEGI-----CHTCGKAGHRARDCTAPP
        S+ + C  CK+ GH A++CP+        A+C  CG  GH         + E      C+ C+  GH+    P   +     C+ CG+ GH         
Subjt:  SRDNLCKNCKRPGHFARECPNV-------AICHNCGLPGH--------IASECTTKSLCWNCREPGHMASSCPNEGI-----CHTCGKAGHRARDCTAPP

Query:  LPPGDLRLCNNCYKQGHIAADCTNEK--------ACNNCRKTGHLARDCPN------------DPICNLCNVSGHVARQCPKSNVLGDRETEAS
                C   Y++ +     T E+         C  C + GH AR+CPN              +C  CN SGH AR+CP S+ +  R+ E S
Subjt:  LPPGDLRLCNNCYKQGHIAADCTNEK--------ACNNCRKTGHLARDCPN------------DPICNLCNVSGHVARQCPKSNVLGDRETEAS

AT4G36020.1 cold shock domain protein 13.3e-2037.13Show/hide
Query:  CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR-----
        C NC   GHFAR+C +                C+ CG  GH+A +CT KS+  N  + G +     N+G C+TCG  GH ARDCT   +  G++R     
Subjt:  CKNCKRPGHFARECPNVAI-------------CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLR-----

Query:  --LCNNCYKQGHIAADCTNE----KACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARQC
           C +C   GHIA DC  +    + C  C  +GHLARDC         ND  C  C   GH AR+C
Subjt:  --LCNNCYKQGHIAADCTNE----KACNNCRKTGHLARDCP--------NDPICNLCNVSGHVARQC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTTCGTATCGTGATGCACCATACAGGAGAGAATC
ACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGGCCGGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGC
ATATTGCTTCAGAGTGCACAACAAAATCACTATGTTGGAACTGCCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGTAAGGCG
GGACATCGAGCCAGGGACTGTACGGCTCCTCCCCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAATGAGAA
GGCATGCAACAATTGTAGGAAGACAGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTCGCCAGACAGTGTCCAAAGT
CCAATGTCCTCGGAGACCGGGAGACCGAGGCATCAGCAGTGGTGGTGGCAGTGGACGTGGTGGTGGTAGTGGTTATCGAGACGTTGTGTGCCGGAACTGCCAGCAACTTG
GCCATATGA
mRNA sequenceShow/hide mRNA sequence
CGACTTTTTATTAGGCCCAAAATACTATTGGGCTTAGTTAGATGGCCCAATACTGTCTTCCACCTTTTCGTTTTCGATCCGATATGTACCGTTTCTTCGACCGCACTTCA
TAAATCTACGTTCTTGAGCGGCTGTTCTCCCGCGAATCTCATCCCGTTGCAGTTCCGTTCGTAATTTTGCATCTTCAGCCATTGAAGCTACGGCAATACAGGCCACAAAC
ACATAGCCATTGGCATTAGGTTTGCTTCTCTTTCATTTCTGATTTACTGTATTGTTTTATTGTCTTATTTGATTTCTAGGGCTACAGGCTTAGGGTACTTTATTCGTTAA
TTTTCCAAAGTTCACGTTGACGTATACTCTTCAGCATTGGAATAAATCTTAATTTTCTGTATGCAATCTTGTTATTGATGCATTGTGTTGCTTCTGCATCTTTCTTTCGG
GGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTATTTTCACTTATCCGTGGGGATAAGTATTGAAGGATAAGTTTGGAAATGAGTTCAGATAGCAGGAGTCGA
AGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGGTCTGATCGTTTTTCGTATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACAA
TCTTTGCAAGAATTGCAAGCGGCCGGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACAA
AATCACTATGTTGGAACTGCCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACCTGTGGTAAGGCGGGACATCGAGCCAGGGACTGTACG
GCTCCTCCCCTGCCACCTGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCAGCTGATTGTACTAATGAGAAGGCATGCAACAATTGTAGGAAGAC
AGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTCGCCAGACAGTGTCCAAAGTCCAATGTCCTCGGAGACCGGGAGA
CCGAGGCATCAGCAGTGGTGGTGGCAGTGGACGTGGTGGTGGTAGTGGTTATCGAGACGTTGTGTGCCGGAACTGCCAGCAACTTGGCCATATGAGTAGGGATTGCATGG
GTCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACCTGGCATACGAATGCCCTTCTGGTCGGTTTATGGATCGTTATCCTAGGAGGTACTGATGATCAAAAGAG
CTAAACATGGTTAAGACAGACCCCCTTCGGATTTTGCTTCGAGTTTAGACAATTCGGGAACTAAACTCTATAGATTGCTCTACTTGCTTAACATTGTAGTATTTGGTTGT
GTTATTTTACCATACATTATTTTCGCTTTAGACGATGAATTTTCAGTATTGTTTTTCAGTATTGCTGATCTTGGTTCTATTTAATAAGACTTTGTTGATTTACCACGTGT
GAACCTTGTAAACTATGAATTATGACTGATTTTGAGAGCTTAGTTGCAAACTTTTAACCTGCATTACATATCTGGATTTCAAAATATTAA
Protein sequenceShow/hide protein sequence
MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKA
GHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRETEASAVVVAVDVVVVVVIETLCAGTASNL
AI