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PI0000216 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000216
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr04:24733698..24733880
RNA-Seq ExpressionPI0000216
SyntenyPI0000216
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046777.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1063.64Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKS-FSKG-----RVVLLKELKGCKAVLNTGVMGNLIALF
        +ELIKDYDCTI YHPGK NVVAD LSRKS  +K      RV LL ELKG KAV+ T   G+L+A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKS-FSKG-----RVVLLKELKGCKAVLNTGVMGNLIALF

KAA0054749.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.5e-1366.67Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        MELIKDY+ TIAYHPGK NVVA+ LSRK+ S   KGR+  +KEL+ CK +LNTG+ GNLIA F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

KAA0059914.1 CCHC-type integrase [Cucumis melo var. makuwa]5.5e-1265.08Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        MELIKDYDCTI YH GK NV AD LSRKS S   KG++ LL EL+ CK +LN  ++GNLIA F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

KAA0066350.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-1060.61Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKS------FSKGRVVLLKELKGCKAVLNTGVMGNLIALF
        +ELIKDYDCTI YHPGK NVVAD LSRKS          RV LL EL+G KAV+ T   G+L+A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKS------FSKGRVVLLKELKGCKAVLNTGVMGNLIALF

KAA0067194.1 polyprotein [Cucumis melo var. makuwa]1.1e-1266.67Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        M+LIKDYDCTIAY+P KVNV+AD LSRKS S   KGR+ LLK+L+G K VLN G  GN +A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

TrEMBL top hitse value%identityAlignment
A0A5A7TY03 DNA/RNA polymerases superfamily protein8.5e-1163.64Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKS-FSKG-----RVVLLKELKGCKAVLNTGVMGNLIALF
        +ELIKDYDCTI YHPGK NVVAD LSRKS  +K      RV LL ELKG KAV+ T   G+L+A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKS-FSKG-----RVVLLKELKGCKAVLNTGVMGNLIALF

A0A5A7UMR3 DNA/RNA polymerases superfamily protein4.1e-1366.67Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        MELIKDY+ TIAYHPGK NVVA+ LSRK+ S   KGR+  +KEL+ CK +LNTG+ GNLIA F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

A0A5A7VGR2 Reverse transcriptase1.1e-1060.61Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKS------FSKGRVVLLKELKGCKAVLNTGVMGNLIALF
        +ELIKDYDCTI YHPGK NVVAD LSRKS          RV LL EL+G KAV+ T   G+L+A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKS------FSKGRVVLLKELKGCKAVLNTGVMGNLIALF

A0A5A7VIK8 Polyprotein5.4e-1366.67Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        M+LIKDYDCTIAY+P KVNV+AD LSRKS S   KGR+ LLK+L+G K VLN G  GN +A F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

A0A5D3DMM3 CCHC-type integrase2.7e-1265.08Show/hide
Query:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF
        MELIKDYDCTI YH GK NV AD LSRKS S   KG++ LL EL+ CK +LN  ++GNLIA F
Subjt:  MELIKDYDCTIAYHPGKVNVVADTLSRKSFS---KGRVVLLKELKGCKAVLNTGVMGNLIALF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTCATTAAAGATTATGATTGCACTATAGCATACCATCCTGGAAAAGTTAACGTGGTAGCAGACACATTGAGCAGAAAGAGCTTCAGCAAAGGGAGAGTAGTCTT
GCTGAAGGAACTGAAAGGTTGCAAGGCGGTCTTAAACACAGGAGTTATGGGGAATTTGATAGCTCTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTCATTAAAGATTATGATTGCACTATAGCATACCATCCTGGAAAAGTTAACGTGGTAGCAGACACATTGAGCAGAAAGAGCTTCAGCAAAGGGAGAGTAGTCTT
GCTGAAGGAACTGAAAGGTTGCAAGGCGGTCTTAAACACAGGAGTTATGGGGAATTTGATAGCTCTTTTTTAG
Protein sequenceShow/hide protein sequence
MELIKDYDCTIAYHPGKVNVVADTLSRKSFSKGRVVLLKELKGCKAVLNTGVMGNLIALF