; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000238 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000238
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:19362726..19363805
RNA-Seq ExpressionPI0000238
SyntenyPI0000238
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]3.2e-2944.08Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK------------------------------SNDPKTYDNQQ
        MKTN DNLGQ GSPVPR ALISQVLLGLDEVYN VI VIQGKP+ISWLDMQS+LLIFEK                               N  + + N++
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK------------------------------SNDPKTYDNQQ

Query:  FHGNNRNNSQGQPVRYVENMVILL--------LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAE
        F+G NR +  GQ           L        L     FNKEF SPL QD     S+ S S NP   V+                  YI++GATNH+T E
Subjt:  FHGNNRNNSQGQPVRYVENMVILL--------LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAE

Query:  YSNLSNPSKYS
         SN++NP++YS
Subjt:  YSNLSNPSKYS

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]2.6e-3949.57Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTI-
        MK NADNLGQAGSPVP   LISQVLLGLDEVYNPV AVIQGKP+ISWLDMQSELLIFE                   N     +  +E+  IL+ +  + 
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTI-

Query:  ----GFNKEFLSPLAQDPGGQLSSFSRS-SNPTTLV--TGYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVL
            GFN         D     +  S S + P T+V    Y+++GATNH+T+++SNL N   YS  E ++VGN + L IS VG A LT G N L L  +L
Subjt:  ----GFNKEFLSPLAQDPGGQLSSFSRS-SNPTTLV--TGYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVL

Query:  CVPDITKNLLSEKATGRTLLTETLKDRLYHLDTV
        CVP+I KNL   K TGR LL  TL D LYHL+ V
Subjt:  CVPDITKNLLSEKATGRTLLTETLKDRLYHLDTV

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.4e-7951.81Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK--------------------------SNDPKTYDNQQFHGN
        MKTN+D LGQAGSPVP+ A ISQ LLGLDEVYNPVIAVIQGKPEISW+DMQSELL FEK                          S+D + Y N QFHGN
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK--------------------------SNDPKTYDNQQFHGN

Query:  NRNNSQGQ------------------PVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVTG-----------------YINNGAT
        NRNNSQGQ                    +  E      L     FNKEFLSPL QD G Q S+FS+ SN T LVTG                 YI++GAT
Subjt:  NRNNSQGQ------------------PVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVTG-----------------YINNGAT

Query:  NHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS----------------------EKATGRTLLTETLK
        NH+T EYSNLSNPS+YS IEKIMVGNGD L+ISY+GNAYLT G+NGLNLKNVLCVPDITKNL+S                      +K TGRTLL  T+K
Subjt:  NHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS----------------------EKATGRTLLTETLK

Query:  DRLYHLDTVRKERK---------------------------EQILPILVWLCLILFGTN
        D LYHLDT+RKE++                           +QILPILVW CL LFGTN
Subjt:  DRLYHLDTVRKERK---------------------------EQILPILVWLCLILFGTN

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.1e-3243.48Show/hide
Query:  GLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKS----------------------------NDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILL----
        GLDEVYN VI VIQGKP+ISWLDMQS+LLIFEK                             N  +   N++F+G NR +  GQ           L    
Subjt:  GLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKS----------------------------NDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILL----

Query:  ----LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISY
            L     FNKEF SPL Q+     S+ S S NP   V+                  YI++GATNH+T E SN++NP++YS IEK+ VGNG+ L ISY
Subjt:  ----LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISY

Query:  VGNAYLTYGVNGLNLKNVLCVPDITKNLLS
        VGN  LT G   L LKN+LCVPDI KNL+S
Subjt:  VGNAYLTYGVNGLNLKNVLCVPDITKNLLS

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.7e-2837.36Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTIG
        MK++ADNL  AGS V    L+SQVL GLDE YNP++  +QGK  +SW +M +ELL +EK  +   Y N    G   N +Q   V YV+         T  
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTIG

Query:  FNKEFLSPLAQDPGGQLSSFSR------------------SSNP---------TTLVT--------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGN
         N    S   +  G Q  SF +                  +S P         TT+ T         Y ++GAT+H+TA  +N+     YS  E ++V N
Subjt:  FNKEFLSPLAQDPGGQLSSFSR------------------SSNP---------TTLVT--------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGN

Query:  GDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLSEKATGRTLLTETLKDRLYHLDTVRKERKEQILPIL
        G+ L IS++G+  +      L LK+VL VPDI KNL  +KA+GRTLL  TLKD LY LD  R  R     P L
Subjt:  GDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLSEKATGRTLLTETLKDRLYHLDTVRKERKEQILPIL

TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X15.1e-3343.48Show/hide
Query:  GLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKS----------------------------NDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILL----
        GLDEVYN VI VIQGKP+ISWLDMQS+LLIFEK                             N  +   N++F+G NR +  GQ           L    
Subjt:  GLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKS----------------------------NDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILL----

Query:  ----LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISY
            L     FNKEF SPL Q+     S+ S S NP   V+                  YI++GATNH+T E SN++NP++YS IEK+ VGNG+ L ISY
Subjt:  ----LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISY

Query:  VGNAYLTYGVNGLNLKNVLCVPDITKNLLS
        VGN  LT G   L LKN+LCVPDI KNL+S
Subjt:  VGNAYLTYGVNGLNLKNVLCVPDITKNLLS

A0A5A7SIT7 Uncharacterized protein1.5e-2944.08Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK------------------------------SNDPKTYDNQQ
        MKTN DNLGQ GSPVPR ALISQVLLGLDEVYN VI VIQGKP+ISWLDMQS+LLIFEK                               N  + + N++
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK------------------------------SNDPKTYDNQQ

Query:  FHGNNRNNSQGQPVRYVENMVILL--------LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAE
        F+G NR +  GQ           L        L     FNKEF SPL QD     S+ S S NP   V+                  YI++GATNH+T E
Subjt:  FHGNNRNNSQGQPVRYVENMVILL--------LSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVT-----------------GYINNGATNHITAE

Query:  YSNLSNPSKYS
         SN++NP++YS
Subjt:  YSNLSNPSKYS

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-7951.81Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK--------------------------SNDPKTYDNQQFHGN
        MKTN+D LGQAGSPVP+ A ISQ LLGLDEVYNPVIAVIQGKPEISW+DMQSELL FEK                          S+D + Y N QFHGN
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEK--------------------------SNDPKTYDNQQFHGN

Query:  NRNNSQGQ------------------PVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVTG-----------------YINNGAT
        NRNNSQGQ                    +  E      L     FNKEFLSPL QD G Q S+FS+ SN T LVTG                 YI++GAT
Subjt:  NRNNSQGQ------------------PVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRSSNPTTLVTG-----------------YINNGAT

Query:  NHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS----------------------EKATGRTLLTETLK
        NH+T EYSNLSNPS+YS IEKIMVGNGD L+ISY+GNAYLT G+NGLNLKNVLCVPDITKNL+S                      +K TGRTLL  T+K
Subjt:  NHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS----------------------EKATGRTLLTETLK

Query:  DRLYHLDTVRKERK---------------------------EQILPILVWLCLILFGTN
        D LYHLDT+RKE++                           +QILPILVW CL LFGTN
Subjt:  DRLYHLDTVRKERK---------------------------EQILPILVWLCLILFGTN

A0A5D3E3L7 Uncharacterized protein1.3e-3949.57Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTI-
        MK NADNLGQAGSPVP   LISQVLLGLDEVYNPV AVIQGKP+ISWLDMQSELLIFE                   N     +  +E+  IL+ +  + 
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTI-

Query:  ----GFNKEFLSPLAQDPGGQLSSFSRS-SNPTTLV--TGYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVL
            GFN         D     +  S S + P T+V    Y+++GATNH+T+++SNL N   YS  E ++VGN + L IS VG A LT G N L L  +L
Subjt:  ----GFNKEFLSPLAQDPGGQLSSFSRS-SNPTTLV--TGYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVL

Query:  CVPDITKNLLSEKATGRTLLTETLKDRLYHLDTV
        CVP+I KNL   K TGR LL  TL D LYHL+ V
Subjt:  CVPDITKNLLSEKATGRTLLTETLKDRLYHLDTV

A0A6J1DCW4 uncharacterized protein LOC1110195981.3e-2837.36Show/hide
Query:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTIG
        MK++ADNL  AGS V    L+SQVL GLDE YNP++  +QGK  +SW +M +ELL +EK  +   Y N    G   N +Q   V YV+         T  
Subjt:  MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTIG

Query:  FNKEFLSPLAQDPGGQLSSFSR------------------SSNP---------TTLVT--------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGN
         N    S   +  G Q  SF +                  +S P         TT+ T         Y ++GAT+H+TA  +N+     YS  E ++V N
Subjt:  FNKEFLSPLAQDPGGQLSSFSR------------------SSNP---------TTLVT--------GYINNGATNHITAEYSNLSNPSKYSSIEKIMVGN

Query:  GDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLSEKATGRTLLTETLKDRLYHLDTVRKERKEQILPIL
        G+ L IS++G+  +      L LK+VL VPDI KNL  +KA+GRTLL  TLKD LY LD  R  R     P L
Subjt:  GDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLSEKATGRTLLTETLKDRLYHLDTVRKERKEQILPIL

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.5e-0741.43Show/hide
Query:  INNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS
        +++GAT+HIT++++NLS    Y+  + +MV +G  + IS+ G+  L+     LNL N+L VP+I KNL+S
Subjt:  INNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.0e-0625.3Show/hide
Query:  TNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGK---PEIS-----WLDMQSELLIFEKS------------NDPKTYDNQQFHGNNRN-----
        T  D L   G P+     + +VL  L + Y PVI  I  K   P ++      ++ +S+LL    +             +  T  NQ   G+NRN     
Subjt:  TNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGK---PEIS-----WLDMQSELLIFEKS------------NDPKTYDNQQFHGNNRN-----

Query:  --------NSQG------QPVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRS-------------SNPTTLVTGYINNGATNHITAEYSNLS
                +S G      QP  Y+    I  +    G + +    L Q         S S             ++P       +++GAT+HIT++++NLS
Subjt:  --------NSQG------QPVRYVENMVILLLSVTIGFNKEFLSPLAQDPGGQLSSFSRS-------------SNPTTLVTGYINNGATNHITAEYSNLS

Query:  NPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS
            Y+  + +M+ +G  + I++ G+A L      L+L  VL VP+I KNL+S
Subjt:  NPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACTAATGCTGATAACCTTGGCCAAGCCGGAAGTCCTGTTCCGAGATGTGCCCTTATTTCACAAGTTCTACTAGGATTGGATGAAGTCTATAATCCCGTCATTGC
TGTTATTCAAGGGAAGCCAGAGATATCATGGCTTGATATGCAGTCAGAGCTTCTTATATTTGAGAAGAGTAATGACCCCAAAACCTATGACAATCAACAGTTTCATGGTA
ATAACAGAAACAATTCTCAAGGCCAACCTGTTAGGTATGTGGAAAATATGGTCATTCTGCTCTTGTCTGTTACAATAGGGTTTAATAAGGAGTTCTTAAGTCCCCTTGCC
CAAGACCCTGGAGGACAATTGTCAAGTTTCTCAAGATCTTCGAATCCTACAACCCTTGTTACTGGGTATATTAACAATGGAGCAACTAACCACATCACTGCTGAATACTC
AAACCTGTCGAATCCATCAAAATACTCAAGTATTGAAAAGATTATGGTTGGAAATGGAGATGGTTTATATATTTCCTATGTTGGTAATGCCTATCTTACTTATGGAGTAA
ATGGTTTAAATCTGAAAAATGTTCTATGTGTGCCTGATATTACCAAAAATCTTTTGAGTGAAAAAGCCACAGGACGAACTCTGTTGACCGAAACACTTAAGGATAGGCTG
TATCATTTGGACACAGTCAGGAAAGAAAGAAAGGAACAAATCTTGCCAATTCTTGTGTGGCTGTGCCTAATACTGTTTGGCACAAACGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACTAATGCTGATAACCTTGGCCAAGCCGGAAGTCCTGTTCCGAGATGTGCCCTTATTTCACAAGTTCTACTAGGATTGGATGAAGTCTATAATCCCGTCATTGC
TGTTATTCAAGGGAAGCCAGAGATATCATGGCTTGATATGCAGTCAGAGCTTCTTATATTTGAGAAGAGTAATGACCCCAAAACCTATGACAATCAACAGTTTCATGGTA
ATAACAGAAACAATTCTCAAGGCCAACCTGTTAGGTATGTGGAAAATATGGTCATTCTGCTCTTGTCTGTTACAATAGGGTTTAATAAGGAGTTCTTAAGTCCCCTTGCC
CAAGACCCTGGAGGACAATTGTCAAGTTTCTCAAGATCTTCGAATCCTACAACCCTTGTTACTGGGTATATTAACAATGGAGCAACTAACCACATCACTGCTGAATACTC
AAACCTGTCGAATCCATCAAAATACTCAAGTATTGAAAAGATTATGGTTGGAAATGGAGATGGTTTATATATTTCCTATGTTGGTAATGCCTATCTTACTTATGGAGTAA
ATGGTTTAAATCTGAAAAATGTTCTATGTGTGCCTGATATTACCAAAAATCTTTTGAGTGAAAAAGCCACAGGACGAACTCTGTTGACCGAAACACTTAAGGATAGGCTG
TATCATTTGGACACAGTCAGGAAAGAAAGAAAGGAACAAATCTTGCCAATTCTTGTGTGGCTGTGCCTAATACTGTTTGGCACAAACGATTAG
Protein sequenceShow/hide protein sequence
MKTNADNLGQAGSPVPRCALISQVLLGLDEVYNPVIAVIQGKPEISWLDMQSELLIFEKSNDPKTYDNQQFHGNNRNNSQGQPVRYVENMVILLLSVTIGFNKEFLSPLA
QDPGGQLSSFSRSSNPTTLVTGYINNGATNHITAEYSNLSNPSKYSSIEKIMVGNGDGLYISYVGNAYLTYGVNGLNLKNVLCVPDITKNLLSEKATGRTLLTETLKDRL
YHLDTVRKERKEQILPILVWLCLILFGTND