; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000246 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000246
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr02:10598408..10598659
RNA-Seq ExpressionPI0000246
SyntenyPI0000246
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008445 - D-aspartate oxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP71307.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]9.5e-2772.29Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSD++E CIEVFMDDFT+Y           + +LNRCIETNLVLN+EKCHFMV HGIVLGHL+S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
RYA56915.1 hypothetical protein DD596_25350, partial [Enterobacter cloacae complex sp. 4DZ3-28B]3.6e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
RZB41284.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]3.6e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
RZC25552.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]3.6e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
WP_165295147.1 RNA-directed DNA polymerase, partial [Enterobacter cloacae complex sp. 4DZ3-28B]3.6e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
TrEMBL top hitse value%identityAlignment
A0A151TW73 Retrovirus-related Pol polyprotein from transposon 17.64.6e-2772.29Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSD++E CIEVFMDDFT+Y           + +LNRCIETNLVLN+EKCHFMV HGIVLGHL+S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
A0A392P218 Reverse transcriptase domain-containing protein (Fragment)2.3e-2674.7Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDFIE C+EVFMDDFTVY            LIL RCIETNLVLNYEKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
A0A445EY74 Reverse transcriptase1.7e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
A0A445FCZ8 Reverse transcriptase2.3e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
A0A445LR48 Transposon Ty3-G Gag-Pol polyprotein1.7e-2673.49Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGLCNAPGTFQRCM+SIFSDF+E CIEVFMDDFTVY           E +LNRCIETNLVLN+EKCHFMV  GIVLGH++S
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.6e-0734.94Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVYE-----------LILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGL NAP TFQRCM  I    + K   V++DD  V+            L+  +  + NL L  +KC F+      LGH+++
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVYE-----------LILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
P20825 Retrovirus-related Pol polyprotein from transposon 2971.3e-0734.94Show/hide
Query:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
        M FGL NAP TFQRCM +I    + K   V++DD  ++           +L+  +  + NL L  +KC F+      LGH+V+
Subjt:  MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVY-----------ELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTGGTTTATGTAATGCGCCTGGCACATTCCAACGCTGTATGATGAGCATCTTTTCAGATTTTATAGAAAAATGCATAGAAGTCTTTATGGACGATTTTACTGT
TTACGAACTAATTCTAAATAGATGCATAGAAACCAATCTAGTTCTGAATTATGAAAAATGTCATTTCATGGTTTCTCACGGCATAGTCCTAGGCCATCTAGTGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTGGTTTATGTAATGCGCCTGGCACATTCCAACGCTGTATGATGAGCATCTTTTCAGATTTTATAGAAAAATGCATAGAAGTCTTTATGGACGATTTTACTGT
TTACGAACTAATTCTAAATAGATGCATAGAAACCAATCTAGTTCTGAATTATGAAAAATGTCATTTCATGGTTTCTCACGGCATAGTCCTAGGCCATCTAGTGTCTTAA
Protein sequenceShow/hide protein sequence
MSFGLCNAPGTFQRCMMSIFSDFIEKCIEVFMDDFTVYELILNRCIETNLVLNYEKCHFMVSHGIVLGHLVS