CuGenDBv2

Gene ID	PI0000274
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	general transcription factor 3C polypeptide 6-like
Genome location	chr03:25488099..25490927
RNA-Seq Expression	PI0000274
Synteny	PI0000274
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019481 - Transcription factor TFIIIC, triple barrel domain IPR042771 - TFIIIC subunit GTF3C6-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]

9.5e-54

91.47

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK  IDSASD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET RCSRE VEPKQAT
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDSAAIPSSIS
        +KELK VA VHKILKFKLLDS  +PSSIS
Subjt:  RKELKPVASVHKILKFKLLDSAAIPSSIS

XP_016899393.1 PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]

2.1e-53

89.92

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK  IDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETN CSREA EPKQAT
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDSAAIPSSIS
        RKELK  A VHKILKFKLLDS  +PS IS
Subjt:  RKELKPVASVHKILKFKLLDSAAIPSSIS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]

7.6e-51

84.73

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK AIDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PS+TNR S +AVEP QA 
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDS--AAIPSSIS
        RK+LKPVASVHKILKFKLLDS  +A+P S S
Subjt:  RKELKPVASVHKILKFKLLDS--AAIPSSIS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]

2.6e-51

84.33

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK AIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PSETNR S +AVEP QA 
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDS-----AAIPSSIS
        RK+LKPVASVHKILKFKLLDS     +A+P S S
Subjt:  RKELKPVASVHKILKFKLLDS-----AAIPSSIS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]

4.7e-53

89.15

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK  IDSA D EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEVPVVEEEA+PSE+NR SREA EPKQA 
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDSAAIPSSIS
        RKELKPVASVHKILKFKLLDS A+P+SIS
Subjt:  RKELKPVASVHKILKFKLLDSAAIPSSIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LML8 TFIIIC_sub6 domain-containing protein

1.3e-53

90.7

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK  IDSASD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSET RCSRE VEP+QAT
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDSAAIPSSIS
        +KELK VA VHKILKFKLLDS  +PSSIS
Subjt:  RKELKPVASVHKILKFKLLDSAAIPSSIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like

1.0e-53

89.92

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK  IDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETN CSREA EPKQAT
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDSAAIPSSIS
        RKELK  A VHKILKFKLLDS  +PS IS
Subjt:  RKELKPVASVHKILKFKLLDSAAIPSSIS

A0A5A7USU8 General transcription factor 3C polypeptide 6-like

1.4e-50

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS
        MEK  IDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVEEEAQPS
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEEEAQPS

Query:  ETNRCSREAVEPKQATRKELKPVASVHKILKFKLLDSAAIPSSIS
        ETN CSREA EPKQATRKELK  A VHKILKFKLLDS  +PS IS
Subjt:  ETNRCSREAVEPKQATRKELKPVASVHKILKFKLLDSAAIPSSIS

A0A6J1FF13 uncharacterized protein LOC111445121

4.8e-51

82.84

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK AIDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PSETNR S +AVEP QA 
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDS-----AAIPSSIS
        R++LKPVASVHKILKFKLLDS     +A+P S S
Subjt:  RKELKPVASVHKILKFKLLDS-----AAIPSSIS

A0A6J1JTZ1 uncharacterized protein LOC111489725

3.7e-51

84.73

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Query:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT
        MEK AIDSASDGEEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VEEEA PS+TNR S +AVEP QA 
Subjt:  MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQAT

Query:  RKELKPVASVHKILKFKLLDS--AAIPSSIS
        RK+LKPVASVHKILKFKLLDS  +A+P S S
Subjt:  RKELKPVASVHKILKFKLLDS--AAIPSSIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G80745.1 Transcription factor TFIIIC, tau55-related protein

1.2e-17

45.79

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQATRKELKPVASVH
        E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F+++                      + +   +K ++PVA +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQATRKELKPVASVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein

4.3e-20

49.53

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Query:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQATRKELKPVASVH
        EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+E+E     E   P                 +K ++PVA +H
Subjt:  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQATRKELKPVASVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

Sequences

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CDS sequence

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ATGGAAAAAGTTGCAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTCGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCGTATGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGAGGAAG
TCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATCGTTGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTACCAGAAAGGAGTTGAAGCCCGTTGCCTCTGTA
CATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTATTCCAAGCTCAATATCTTAG

mRNA sequence

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TTTTTCTTTACCTCATGCGAGCAGTGGGTAGTGGGTAAGGCCCTTCTCCAAACCCCTTCCTACCTTCCTACGAGACTCACCCAACCCACCCTAAACGCATAAGAACAAAG
AACACGTCCTCGCCTTTCCTCCGTCCGACCACCGGCTGCCTCTGCTCACGCCTGCATCTCACTTTTCCCAGTCGTTGCCGCACCGTTTAGCAGCCCGCCCTGCCACAACG
AAAATCCTCCGCCTCCTATCGTCCATCTTTGCCACGCTACTGCCGGAGCTCCAACTGATTTCAAATTTTTATTTGATATTGCTTAGGTATCAAAACAAATCACAGTTGAT
TTTTAGGAACATGGAAAAAGTTGCAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTCGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTC
CGTATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCG
GAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATCGTTGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTACCAGAAAGGAGTTGAAGCCCGT
TGCCTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTATTCCAAGCTCAATATCTTAGTGCACTAAAGAGACTAATGTTATTTCATGTGTATATATTG
AGCTGTAAGTTGTATGTATAGTTAGATGCAAATGGGACATAACCTAAGAATTTAGATGAGTTGTCAGTACTCATCCAAGTAAAGAAGTAGAGAGGGAAAGAGGTATCGTC
GTTCAACGCATGAAGTTTGTAAATCAAAACACCTCACTATCTTCTATAAAATAGACCGGAGGAGTTATCATGGAAGAGTATTTTCTTACCAAATATTT

Protein sequence

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MEKVAIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNRCSREAVEPKQATRKELKPVASV
HKILKFKLLDSAAIPSSIS

PI0000274 (gene) of Melon (PI 482460) v1 genome