CuGenDBv2

Gene ID	PI0000281
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr01:11573057..11573428
RNA-Seq Expression	PI0000281
Synteny	PI0000281
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]

5.5e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FG R++EQ+FPSYINNVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]

3.2e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

3.2e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

2.7e-50

81.3

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYG IK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

KAA0056622.1 uncharacterized protein E6C27_scaffold288G001420 [Cucumis melo var. makuwa]

1.0e-49

80.49

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPN GKHKS FGQR++EQ+FPSYI+N SH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0H8 Uncharacterized protein

1.6e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

A0A5A7T0R1 Uncharacterized protein

1.6e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

A0A5A7T1W2 Retrotrans_gag domain-containing protein

2.7e-51

82.11

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYGGIK+G  +KKKEGEVH +GFPNSGKHKS FG R++EQ+FPSYINNVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

1.3e-50

81.3

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AEATTEYG IK+G  +KKKEGEVH +GFPNSGKHKS FGQR++EQ+FPSYI+NVSH PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

A0A5A7V3W7 Retrotrans_gag domain-containing protein

5.0e-50

79.67

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Query:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP
        MIGNA+TNFSDIIVIGERIEYGIK GR+AE TTEYGGIK+G  +KKKEGE+H +GFPNSGKHKS FGQR++EQ+FPSYI+NVS+ PYN+YVPAHT S TP
Subjt:  MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTP

Query:  KPVNLNSPRPFAQGRGSKANSDT
        KPVN NSPRPF QG+GSK NSDT
Subjt:  KPVNLNSPRPFAQGRGSKANSDT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGGTAATGCAACAACGAATTTTTCTGACATTATCGTTATTGGTGAGAGAATTGAATATGGGATAAAGCAAGGGAGGATAGCAGAGGCTACAACTGAATATGGTGG
AATAAAGAGAGGGGCAACAACTAAGAAGAAAGAAGGAGAGGTTCATACAGTTGGTTTTCCTAATTCAGGGAAGCACAAATCGAGTTTTGGGCAAAGAGAACATGAGCAAA
GTTTTCCATCATATATAAACAATGTTTCTCATTTCCCTTACAACAACTATGTACCAGCTCACACCTTCTCTGGAACTCCAAAACCTGTTAACTTAAACTCTCCTCGACCA
TTTGCACAGGGTCGAGGTAGCAAAGCTAATTCAGATACTTGA

mRNA sequence

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Protein sequence

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MIGNATTNFSDIIVIGERIEYGIKQGRIAEATTEYGGIKRGATTKKKEGEVHTVGFPNSGKHKSSFGQREHEQSFPSYINNVSHFPYNNYVPAHTFSGTPKPVNLNSPRP
FAQGRGSKANSDT

PI0000281 (gene) of Melon (PI 482460) v1 genome