; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000380 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000380
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:12810573..12811151
RNA-Seq ExpressionPI0000380
SyntenyPI0000380
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]3.0e-8080.73Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MN+SIVQLLA EKLNGDNY AWKSNL TILVVDDLRF+LTEEC QA A NANRT+ +AY +WVK N+K RVYILAS+T+VLAKKH+S+AT K I+DSL++
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF QPS+SLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNI EVNG PI+E NQV FILQSL KSF+PFQTNASLNKIEFNLT LLNE+Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

KAA0064149.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-7578.65Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLNGDNYV WKSNL TILVVD+LRF+LTEEC Q  A N NRT  KAY +W+K NEKVRVYILAS+++VLAKKHESLATTK  +DSLK 
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF Q  +SLRHEA K+IYTKRMKEGTSVREHVLDMMMHFNI +VNG  INE NQV FIL+SL KSFIPFQTNASLNKIEFNLT  LNE Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

TYK06494.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-7579.17Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLN DNY AWKSNL TILVVDDLRF+LTEEC Q  A NANRT  KAY +W+K NEKVRVYILAS+++VLAKKHESL   K I+DSLK+
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF QP +SLRHEAIK+IYTK MKEGTSVRE VLDMMMHFNI +VNG  I+E NQV FIL+SLSKSFIPFQTNASLNKIEFNLTILLNE+Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

TYK16012.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-7578.65Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLNGDNYV WKSNL TILVVD+LRF+LTEEC Q  A N NRT  KAY +W+K NEKVRVYILAS+++VLAKKHESLATTK  +DSLK 
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF Q  +SLRHEA K+IYTKRMKEGTSVREHVLDMMMHFNI +VNG  INE NQV FIL+SL KSFIPFQTNASLNKIEFNLT  LNE Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

XP_038882326.1 uncharacterized protein LOC120073576 [Benincasa hispida]2.7e-7678.31Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MN+SI+QLLA EKLNGDNY AWKSNL TILVVD+LRF+LTEEC QA A NANRTI +AY +W+K NEK RVYILA++++VLAKKHESLATTK IIDSL++
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEI
        MF QPS+SLRHEAIKHIYTK MKEGTSVREH+LDMMM+FNI +VNGRPI+E NQV FILQ + KSFIPF+TNASLNKIEFN T LLNE+
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEI

TrEMBL top hitse value%identityAlignment
A0A5A7T0E9 Gag/pol protein8.3e-7677.6Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA +KLNGDNY  WKSNL TILVVDDLRF+LTEEC Q    NANR   +AY +W+K NEK RVYILAS+++VLAKKHE LATTK I+DSLK 
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF QP +SLRHEAIK+IYTKRMK+GTSVREHVLDMMMHFNI EVNG  I+E NQV FIL+SL KSFIPFQTNASLNKIEFNLT LLNE+Q F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

A0A5A7VF40 Gag/pol protein6.4e-7678.65Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLNGDNYV WKSNL TILVVD+LRF+LTEEC Q  A N NRT  KAY +W+K NEKVRVYILAS+++VLAKKHESLATTK  +DSLK 
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF Q  +SLRHEA K+IYTKRMKEGTSVREHVLDMMMHFNI +VNG  INE NQV FIL+SL KSFIPFQTNASLNKIEFNLT  LNE Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

A0A5D3C591 Gag/pol protein6.4e-7679.17Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLN DNY AWKSNL TILVVDDLRF+LTEEC Q  A NANRT  KAY +W+K NEKVRVYILAS+++VLAKKHESL   K I+DSLK+
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF QP +SLRHEAIK+IYTK MKEGTSVRE VLDMMMHFNI +VNG  I+E NQV FIL+SLSKSFIPFQTNASLNKIEFNLTILLNE+Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

A0A5D3CWV9 Gag/pol protein6.4e-7678.65Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MNSSIVQLLA EKLNGDNYV WKSNL TILVVD+LRF+LTEEC Q  A N NRT  KAY +W+K NEKVRVYILAS+++VLAKKHESLATTK  +DSLK 
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF Q  +SLRHEA K+IYTKRMKEGTSVREHVLDMMMHFNI +VNG  INE NQV FIL+SL KSFIPFQTNASLNKIEFNLT  LNE Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

E2GK51 Gag/pol protein (Fragment)1.5e-8080.73Show/hide
Query:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD
        MN+SIVQLLA EKLNGDNY AWKSNL TILVVDDLRF+LTEEC QA A NANRT+ +AY +WVK N+K RVYILAS+T+VLAKKH+S+AT K I+DSL++
Subjt:  MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKD

Query:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF
        MF QPS+SLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNI EVNG PI+E NQV FILQSL KSF+PFQTNASLNKIEFNLT LLNE+Q+F
Subjt:  MFRQPSYSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCTCAATAGTCCAACTTTTAGCTTTCGAGAAACTTAACGGTGATAACTATGTTGCTTGGAAATCAAATCTAATCACGATACTAGTCGTTGATGACTTAAGATT
CATGTTAACTGAGGAATGTTCTCAAGCCCTGGCCCCAAATGCTAACCGAACTATTTGGAAAGCATATGGTCAATGGGTAAAAGTTAATGAGAAAGTTCGTGTCTATATTC
TTGCCAGCATAACTAATGTTTTGGCAAAGAAACATGAATCCTTAGCCACGACTAAAGCGATTATAGATTCATTAAAGGACATGTTCAGGCAACCATCATACTCCCTGAGA
CACGAAGCAATAAAACATATTTACACAAAGCGAATGAAGGAAGGGACCTCTGTAAGGGAACATGTCCTAGACATGATGATGCACTTCAACATCCCTGAGGTAAATGGTAG
ACCCATCAATGAGCCTAATCAGGTTTGCTTTATCTTACAATCTCTTTCGAAGAGTTTTATACCGTTTCAGACGAATGCGTCTTTAAACAAGATAGAGTTCAATCTGACTA
TCCTTTTGAATGAGATTCAACAGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGCTCAATAGTCCAACTTTTAGCTTTCGAGAAACTTAACGGTGATAACTATGTTGCTTGGAAATCAAATCTAATCACGATACTAGTCGTTGATGACTTAAGATT
CATGTTAACTGAGGAATGTTCTCAAGCCCTGGCCCCAAATGCTAACCGAACTATTTGGAAAGCATATGGTCAATGGGTAAAAGTTAATGAGAAAGTTCGTGTCTATATTC
TTGCCAGCATAACTAATGTTTTGGCAAAGAAACATGAATCCTTAGCCACGACTAAAGCGATTATAGATTCATTAAAGGACATGTTCAGGCAACCATCATACTCCCTGAGA
CACGAAGCAATAAAACATATTTACACAAAGCGAATGAAGGAAGGGACCTCTGTAAGGGAACATGTCCTAGACATGATGATGCACTTCAACATCCCTGAGGTAAATGGTAG
ACCCATCAATGAGCCTAATCAGGTTTGCTTTATCTTACAATCTCTTTCGAAGAGTTTTATACCGTTTCAGACGAATGCGTCTTTAAACAAGATAGAGTTCAATCTGACTA
TCCTTTTGAATGAGATTCAACAGTTCTAA
Protein sequenceShow/hide protein sequence
MNSSIVQLLAFEKLNGDNYVAWKSNLITILVVDDLRFMLTEECSQALAPNANRTIWKAYGQWVKVNEKVRVYILASITNVLAKKHESLATTKAIIDSLKDMFRQPSYSLR
HEAIKHIYTKRMKEGTSVREHVLDMMMHFNIPEVNGRPINEPNQVCFILQSLSKSFIPFQTNASLNKIEFNLTILLNEIQQF