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PI0000398 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000398
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr09:7941023..7941382
RNA-Seq ExpressionPI0000398
SyntenyPI0000398
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]9.5e-2460.58Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+M TR+ R+SE R  SSGSKRKR G A ++ +I+R+AM+Y N+QL  IAEW   QRQDA+ TR E+VRQL+ IPE++ +DR R MRI+M +VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-2457.69Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPD++MGTR+ R+SE R  SSGSK+KRGG  +++ +I+R+A++Y N+QL  IAEW   QRQDA+ TR EVVRQL+ IPE++ +DR R MRI++ +V+DM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-2767.31Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        M  DDIMGTR  R +E R GSSGSKRK+GGQA+E  EIIR+ M+++ND+LKAI EW   QRQDAS    EVVRQLQ IPE+SR DRVR M+I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-2561.54Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+MGTR+ R+SE R  SSGSKRKR G A ++ +I+R+A++Y N+QL  IAEW   QRQ+AS TR EVVRQL+ IPE+  +DR R M I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
TYK10954.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2460.58Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+MGTR+ R+SE R  SSGSKRKR G A ++ +I+R+A++Y N+QL  IAEW   QRQ+AS TR EVVR+L+ IPE+  +DR R M I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein4.6e-2460.58Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+M TR+ R+SE R  SSGSKRKR G A ++ +I+R+AM+Y N+QL  IAEW   QRQDA+ TR E+VRQL+ IPE++ +DR R MRI+M +VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
A0A5A7TZA5 Retrotransposon protein3.5e-2457.69Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPD++MGTR+ R+SE R  SSGSK+KRGG  +++ +I+R+A++Y N+QL  IAEW   QRQDA+ TR EVVRQL+ IPE++ +DR R MRI++ +V+DM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
A0A5A7V469 Retrotransposon protein6.8e-2867.31Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        M  DDIMGTR  R +E R GSSGSKRK+GGQA+E  EIIR+ M+++ND+LKAI EW   QRQDAS    EVVRQLQ IPE+SR DRVR M+I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
A0A5A7VBC5 Retrotransposon protein1.9e-2561.54Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+MGTR+ R+SE R  SSGSKRKR G A ++ +I+R+A++Y N+QL  IAEW   QRQ+AS TR EVVRQL+ IPE+  +DR R M I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
A0A5D3CIF5 Retrotransposon protein5.4e-2560.58Show/hide
Query:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM
        MSPDD+MGTR+ R+SE R  SSGSKRKR G A ++ +I+R+A++Y N+QL  IAEW   QRQ+AS TR EVVR+L+ IPE+  +DR R M I+MC+VDDM
Subjt:  MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDM

Query:  KAFI
        KAF+
Subjt:  KAFI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTGACGACATAATGGGTACACGATCGGTTCGTATGTCTGAGGCTAGGGTTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCAGA
AATTATTCGCAGTGCCATGGATTATGCTAATGACCAGTTGAAGGCCATTGCAGAATGGTCCAAAGAACAACGGCAAGATGCAAGCGTGACACGTGCAGAAGTCGTTAGAC
AACTACAGGGAATCCCGGAGGTGAGTCGACTGGACAGGGTTCGTTGGATGCGCATAATGATGTGCAGCGTGGATGACATGAAAGCATTTATAGCATCCTGGGCGAGCTTA
AGTTGGATTACTGCACGGTCAAGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCTGACGACATAATGGGTACACGATCGGTTCGTATGTCTGAGGCTAGGGTTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCAGA
AATTATTCGCAGTGCCATGGATTATGCTAATGACCAGTTGAAGGCCATTGCAGAATGGTCCAAAGAACAACGGCAAGATGCAAGCGTGACACGTGCAGAAGTCGTTAGAC
AACTACAGGGAATCCCGGAGGTGAGTCGACTGGACAGGGTTCGTTGGATGCGCATAATGATGTGCAGCGTGGATGACATGAAAGCATTTATAGCATCCTGGGCGAGCTTA
AGTTGGATTACTGCACGGTCAAGGAAATAA
Protein sequenceShow/hide protein sequence
MSPDDIMGTRSVRMSEARVGSSGSKRKRGGQALEAAEIIRSAMDYANDQLKAIAEWSKEQRQDASVTRAEVVRQLQGIPEVSRLDRVRWMRIMMCSVDDMKAFIASWASL
SWITARSRK