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PI0000400 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000400
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:26238897..26239199
RNA-Seq ExpressionPI0000400
SyntenyPI0000400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039561.1 hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa]4.0e-1553.19Show/hide
Query:  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE
        M+PR      RQV  GV  T SAN+  ES+++S+NP   I+QN E+S+F+RF QR+ D+ M +    DKRF I+RL+ALGATTFE T NLADT+
Subjt:  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE

KAA0047014.1 hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa]3.0e-1559.52Show/hide
Query:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLAD
        R RQVA  V VT  ANRA  S ++SSNP  ++ QN EES+F+RF QR+ D+ M      DKRFGI+RLKALGA TFE  TNLAD
Subjt:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLAD

KAA0054080.1 hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa]5.4e-1257.89Show/hide
Query:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT
        QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF QRVAD+++      +KR  I+R+KALGAT FE T
Subjt:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT

KAE8648186.1 hypothetical protein Csa_018470 [Cucumis sativus]3.6e-1661.63Show/hide
Query:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE
        R  QV TGV  TG ANRA ESD+MSSNP   I QN EES+F+ F QR  D+ +S     DKRF I+RLKAL ATTFE TTN AD E
Subjt:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE

TYK27664.1 uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa]3.1e-1257.89Show/hide
Query:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT
        QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF +RVAD+++      +KR  I+R+KALGATTFE T
Subjt:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT

TrEMBL top hitse value%identityAlignment
A0A5A7TVM1 Uncharacterized protein1.5e-1559.52Show/hide
Query:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLAD
        R RQVA  V VT  ANRA  S ++SSNP  ++ QN EES+F+RF QR+ D+ M      DKRFGI+RLKALGA TFE  TNLAD
Subjt:  RVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLAD

A0A5A7UFQ1 Uncharacterized protein2.6e-1257.89Show/hide
Query:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT
        QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF QRVAD+++      +KR  I+R+KALGAT FE T
Subjt:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT

A0A5A7UG91 Uncharacterized protein6.4e-1150Show/hide
Query:  SPRVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE
        S R  QV TGV+ T + +R  ESD+MS N    + QN  ES+F+RFT+++ D+ M +     KRFGIKRLKAL A TFE TTN  D +
Subjt:  SPRVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE

A0A5D3BUF6 Uncharacterized protein1.9e-1553.19Show/hide
Query:  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE
        M+PR      RQV  GV  T SAN+  ES+++S+NP   I+QN E+S+F+RF QR+ D+ M +    DKRF I+RL+ALGATTFE T NLADT+
Subjt:  MSPR-----VRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTE

A0A5D3DVY7 Uncharacterized protein1.5e-1257.89Show/hide
Query:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT
        QVA  V+  GSANRA   D+MSSNP   I QN EES+FNRF +RVAD+++      +KR  I+R+KALGATTFE T
Subjt:  QVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCGCGAGTAAGGCAAGTGGCAACTGGAGTCCGAGTTACTGGGAGCGCTAATAGAGCGCCTGAATCGGATCAAATGTCAAGTAATCCTCGTGTTGCAATTGAGCA
AAACGCAGAAGAAAGTATATTCAATCGTTTTACTCAGAGAGTGGCAGACTACATTATGTCATCAAACCATGCAGCAGATAAAAGATTTGGCATTAAAAGGTTGAAGGCAT
TGGGAGCAACAACCTTTGAAAGGACCACTAATCTGGCCGACACGGAGATTTTAGCAACATATAAGATTGTTGTCAAATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCGCGAGTAAGGCAAGTGGCAACTGGAGTCCGAGTTACTGGGAGCGCTAATAGAGCGCCTGAATCGGATCAAATGTCAAGTAATCCTCGTGTTGCAATTGAGCA
AAACGCAGAAGAAAGTATATTCAATCGTTTTACTCAGAGAGTGGCAGACTACATTATGTCATCAAACCATGCAGCAGATAAAAGATTTGGCATTAAAAGGTTGAAGGCAT
TGGGAGCAACAACCTTTGAAAGGACCACTAATCTGGCCGACACGGAGATTTTAGCAACATATAAGATTGTTGTCAAATATTGA
Protein sequenceShow/hide protein sequence
MSPRVRQVATGVRVTGSANRAPESDQMSSNPRVAIEQNAEESIFNRFTQRVADYIMSSNHAADKRFGIKRLKALGATTFERTTNLADTEILATYKIVVKY