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PI0000470 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000470
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr09:6046278..6048345
RNA-Seq ExpressionPI0000470
SyntenyPI0000470
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-5578.95Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSR+ QS ED P FEVAK+I E++SKPPKGGI+IKENP IDEH SS EHS EEMPH NIMSVMVTDVDTSE+RM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE
        KKVNML+KAVEER+YEIASL+NHIESHDAAES HT+T KN +KGK I+QE +
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]4.8e-5576.13Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPF+VAK+I E++SKPPKGGI+IKENP +DEH S SE S+EE+P PNIMSVMVTDVDTSEDRM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIES DAAES HT+T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]9.5e-1967.47Show/hide
Query:  EKEEKHVEDADEGWTLVTRRKKHKQNFSKKESRLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFFPENF
        ++EEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDFFP+NF
Subjt:  EKEEKHVEDADEGWTLVTRRKKHKQNFSKKESRLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFFPENF

KAA0060608.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-5676.77Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPFEVAK+I E++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMS+MVTDVDTSEDRMT+LE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIESHDAAES H++T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-5676.77Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPFEVAK+I E++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMS+MVTDVDTSEDRMT+LE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIESHDAAES H++T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-5780.92Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSR+ QS ED P FEVAK+I E++SKPPKGGI+IKENP IDEH SS EHSSEEMPH NIMSVMVTDVDTSE+RM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE
        KKVNML+KAVEER+YEIASL+NHIESHDAAES HT+T KN DKGKTI+QE +
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE

TrEMBL top hitse value%identityAlignment
A0A5A7T5T3 Ty3-gypsy retrotransposon protein8.1e-5678.95Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSR+ QS ED P FEVAK+I E++SKPPKGGI+IKENP IDEH SS EHS EEMPH NIMSVMVTDVDTSE+RM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE
        KKVNML+KAVEER+YEIASL+NHIESHDAAES HT+T KN +KGK I+QE +
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE

A0A5A7TZU9 Ribonuclease H2.3e-5576.13Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPF+VAK+I E++SKPPKGGI+IKENP +DEH S SE S+EE+P PNIMSVMVTDVDTSEDRM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIES DAAES HT+T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

A0A5A7TZU9 Ribonuclease H4.6e-1967.47Show/hide
Query:  EKEEKHVEDADEGWTLVTRRKKHKQNFSKKESRLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFFPENF
        ++EEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDFFP+NF
Subjt:  EKEEKHVEDADEGWTLVTRRKKHKQNFSKKESRLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFFPENF

A0A5A7UZD5 Ty3-gypsy retrotransposon protein1.6e-5676.77Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPFEVAK+I E++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMS+MVTDVDTSEDRMT+LE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIESHDAAES H++T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

A0A5D3BRH6 Ty3-gypsy retrotransposon protein1.6e-5676.77Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSRE QSSEDMPPFEVAK+I E++SKPPKGGI+IKENP IDEH S SE S+EE+P PNIMS+MVTDVDTSEDRMT+LE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH
        KKVNML+KAVEER++EIA L+NHIESHDAAES H++T KN +KGK I+QE + ++
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKH

A0A5D3C857 Ty3-gypsy retrotransposon protein1.5e-5780.92Show/hide
Query:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE
        MTS+GNTSKALS+IGKRPNTR+RSR+ QS ED P FEVAK+I E++SKPPKGGI+IKENP IDEH SS EHSSEEMPH NIMSVMVTDVDTSE+RM ELE
Subjt:  MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELE

Query:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE
        KKVNML+KAVEER+YEIASL+NHIESHDAAES HT+T KN DKGKTI+QE +
Subjt:  KKVNMLLKAVEERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAAAGGCCAAATACTCGCAACCGCTCAAGGGAGGCCCAATCATCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAGTATCAGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAATCCTGTGATTGATGAGCACGGTTCGTCTTCTGAACACTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTTGATACAAGTGAAGATAGAATGACGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGAATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCATGACGCTGCTGAATCAAGGCACACATATACCACCAAGAATAAGGACAAAGGGAAGACAAT
TTTGCAGGAAAAAGAAGAAAAGCATGTGGAGGATGCTGATGAGGGATGGACGCTAGTCACGCGTCGAAAAAAGCACAAACAAAATTTTTCTAAAAAAGAATCCCGCTTGT
ACCGAGAGTATAAAAGAAAGGGCAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACCAAAGAAGGTGAGGAGCTTCCTCGACCACGACAA
CCAATAACTTTGAAAGACTTTTTCCCTGAAAACTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAATTGAAGATGGCACTTCTCCCTCAAATTCCGCAGAAGTC
AGTACAACTGGGGATGACACTTCTCCCTCAAAGTCTGCAGAAGCAACAACCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCCAGAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAAAGGCCAAATACTCGCAACCGCTCAAGGGAGGCCCAATCATCTGAGGATATGCCACCCTTTGA
GGTCGCAAAGAGTATCAGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAGGAAAATCCTGTGATTGATGAGCACGGTTCGTCTTCTGAACACTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTTGATACAAGTGAAGATAGAATGACGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAGGCAGTT
GAAGAAAGGAATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCATGACGCTGCTGAATCAAGGCACACATATACCACCAAGAATAAGGACAAAGGGAAGACAAT
TTTGCAGGAAAAAGAAGAAAAGCATGTGGAGGATGCTGATGAGGGATGGACGCTAGTCACGCGTCGAAAAAAGCACAAACAAAATTTTTCTAAAAAAGAATCCCGCTTGT
ACCGAGAGTATAAAAGAAAGGGCAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGGAAGTTTCAACCAATCACCAAAGAAGGTGAGGAGCTTCCTCGACCACGACAA
CCAATAACTTTGAAAGACTTTTTCCCTGAAAACTTCCATTGGAAATCGTTTCGTGCCATGCTGTCAGTACAATTGAAGATGGCACTTCTCCCTCAAATTCCGCAGAAGTC
AGTACAACTGGGGATGACACTTCTCCCTCAAAGTCTGCAGAAGCAACAACCAAGCTAG
Protein sequenceShow/hide protein sequence
MTSRGNTSKALSNIGKRPNTRNRSREAQSSEDMPPFEVAKSIREELSKPPKGGIIIKENPVIDEHGSSSEHSSEEMPHPNIMSVMVTDVDTSEDRMTELEKKVNMLLKAV
EERNYEIASLRNHIESHDAAESRHTYTTKNKDKGKTILQEKEEKHVEDADEGWTLVTRRKKHKQNFSKKESRLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQ
PITLKDFFPENFHWKSFRAMLSVQLKMALLPQIPQKSVQLGMTLLPQSLQKQQPS