; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000496 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000496
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:11119044..11119631
RNA-Seq ExpressionPI0000496
SyntenyPI0000496
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-8279.38Show/hide
Query:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV
        DRNTVDA  GGALADK PTEARELIS+MAENSQ+F N ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ N+
Subjt:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV

Query:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        +RKYDPH NTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GKGKL AQS++ANVSA+
Subjt:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-7977.2Show/hide
Query:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        RNTVD A GGALADKTPTEARELISRMAENSQ+FGN AS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ NV+
Subjt:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPH NT N+GWRDNPN RWGNDN++  Q   +S+NQGTNL+D++KALA NT+SFQ EMKQQ++ LT AISK++GKGKLPAQ +HANVS I
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-8279.38Show/hide
Query:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV
        DRNT+D   GGALADKTPTEARELISRM ENSQ+FGN ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N+
Subjt:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV

Query:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        +R+YDPHSNTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQ D+ANVSAI
Subjt:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-7979.27Show/hide
Query:  NTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        NTVDAA G ALADKTPTEARELISRMA+N Q+FGN ASE DNSLTKEVSELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ N++
Subjt:  NTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPHSNTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.3e-8280.31Show/hide
Query:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        RNT+D A GGALADKTPTEARELISRMAENS++FGN ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPHSNTYN+GWRDN NLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GKGKLPAQ DHANVSAI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

TrEMBL top hitse value%identityAlignment
A0A5A7ULU1 Retrotransposon gag protein3.7e-7977.2Show/hide
Query:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        RNTVD A GGALADKTPTEARELISRMAENSQ+FGN AS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ NV+
Subjt:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPH NT N+GWRDNPN RWGNDN++  Q   +S+NQGTNL+D++KALA NT+SFQ EMKQQ++ LT AISK++GKGKLPAQ +HANVS I
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

A0A5A7V0Q7 Retrotransposon gag protein3.6e-8279.38Show/hide
Query:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV
        DRNT+D   GGALADKTPTEARELISRM ENSQ+FGN ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKC  ++E+ N+
Subjt:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV

Query:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        +R+YDPHSNTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KAL TNT+SFQ EMKQQM+ LT AISK++GKGKLPAQ D+ANVSAI
Subjt:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

A0A5A7VQ60 Retrotransposon gag protein2.2e-7979.27Show/hide
Query:  NTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        NTVDAA G ALADKTPTEARELISRMA+N Q+FGN ASE DNSLTKEVSELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP ++E+ N++
Subjt:  NTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPHSNTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

A0A5D3CB46 Retrotransposon gag protein2.1e-8280.31Show/hide
Query:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI
        RNT+D A GGALADKTPTEARELISRMAENS++FGN ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPNDKCP ++E+ N++
Subjt:  RNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVI

Query:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        R+YDPHSNTYN+GWRDN NLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ +MKQQM+ LT AISK++GKGKLPAQ DHANVSAI
Subjt:  RKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

A0A5D3CRR8 Retrotransposon gag protein3.6e-8279.38Show/hide
Query:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV
        DRNTVDA  GGALADK PTEARELIS+MAENSQ+F N ASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP ++E+ N+
Subjt:  DRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANV

Query:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI
        +RKYDPH NTYN+GWRDNPNLRWGNDN++  QA S+S+NQGTNLED++KALATNT+SFQ EMKQQM+ LT AISK++GKGKL AQS++ANVSA+
Subjt:  IRKYDPHSNTYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGATGCTGCAACAGGTGGTGCATTGGCTGACAAAACCCCTACTGAAGCAAGAGAGCTCATTTCAAGGATGGCAGAGAATTCACAGAACTTTGG
AAATATGGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTCGCAAAGTGCGGGGTATGCGGTTTAGTTGGACATCCTAATGACAAGTGCCCTAACTTACTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAAT
ACTTACAATACCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACAAAAGATCCTTGCAAGCGACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGA
TCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAGAATGAAATGAAACAACAGATGTCTCATTTGACAAACGCAATTAGCAAGTTAGAAGGTAAAGGCAAACTTC
CAGCTCAGTCTGATCATGCTAATGTAAGTGCCATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGATGCTGCAACAGGTGGTGCATTGGCTGACAAAACCCCTACTGAAGCAAGAGAGCTCATTTCAAGGATGGCAGAGAATTCACAGAACTTTGG
AAATATGGCATCCGAGCTCGACAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTCGCAAAGTGCGGGGTATGCGGTTTAGTTGGACATCCTAATGACAAGTGCCCTAACTTACTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAAT
ACTTACAATACCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACAAAAGATCCTTGCAAGCGACTTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGA
TCTAGTTAAAGCTCTTGCTACTAACACCATCTCTTTTCAGAATGAAATGAAACAACAGATGTCTCATTTGACAAACGCAATTAGCAAGTTAGAAGGTAAAGGCAAACTTC
CAGCTCAGTCTGATCATGCTAATGTAAGTGCCATCTAG
Protein sequenceShow/hide protein sequence
MDRNTVDAATGGALADKTPTEARELISRMAENSQNFGNMASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPNLLEEANVIRKYDPHSN
TYNTGWRDNPNLRWGNDNKRSLQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQMSHLTNAISKLEGKGKLPAQSDHANVSAI