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PI0000500 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000500
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:19584208..19584806
RNA-Seq ExpressionPI0000500
SyntenyPI0000500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025495.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-5362.13Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP
        MRGP+C+ FGWNDE KCI+ EK+++D WSHPTA GLLNK F HYD+L YVFG+D ATGGRAE+FAD+GSN PAGYD FP     D +F  MYS GL+MS 
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVV
        DD+M T+  R+SE R  SSGSKRK  G   ++ +I+R+A+KY N+QL  IA+WP  QRQDAS TR E+V
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVV

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-5361.05Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP
        MRGP+CSGFGWNDE KCI+ EK+++D WSHP A GLLNK F HYD+L YVFG+D ATGGRAE+FAD+GSN P GYD F      D +FS MYS GL+MSP
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        DD+M T+  R+SE R  SSGSKRK+ G   ++ +I+R+A++Y N+QL  IA+WP  QRQDA+ TR E+V++L
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5362.64Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM
        MRGP+CSGFGWNDE KCI+VEK+L+D W  SHP A GLLNK F HYD+L YVFG+D ATGGRAE+F D+GSN PAGYD F      D  FS MYS GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM

Query:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        SPDD+M T+  R+SE R  SSGSKRK+ G V ++ +I+ +A++Y N+QL  IA+WP  QRQDAS TR E+VR+L
Subjt:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

KAA0048317.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-5260.47Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP
        MRGP+CSGFGWNDE KCI+ EK+++D WSHP A  LLNK F HYD+L YV G+D ATGGR E+FAD+GSN PAGYD F      D  FS MYS GL+MSP
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        DD+M T+  R+SE R  SSGSKRK+ G   ++ +I+R A++Y N+QL  IA+WP  QRQDA+ TR E+VR+L
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-5561.49Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM
        MRGP+CSGFGWNDE KCI+ EK+++D W  SHP A GLLNK FPHYD+L YVF +D ATGGRAE+FADVGSN P GYD F      D +F  MYS+GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM

Query:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        SPD++MGT+  R+SEGR  SSGSK+K+GG  +++ +I+R+A++Y N+QL  IA+W   QRQDA+ TR EVVR+L
Subjt:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

TrEMBL top hitse value%identityAlignment
A0A5A7SM12 Retrotransposon protein1.0e-5362.13Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP
        MRGP+C+ FGWNDE KCI+ EK+++D WSHPTA GLLNK F HYD+L YVFG+D ATGGRAE+FAD+GSN PAGYD FP     D +F  MYS GL+MS 
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVV
        DD+M T+  R+SE R  SSGSKRK  G   ++ +I+R+A+KY N+QL  IA+WP  QRQDAS TR E+V
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVV

A0A5A7SWD8 Retrotransposon protein1.0e-5361.05Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP
        MRGP+CSGFGWNDE KCI+ EK+++D WSHP A GLLNK F HYD+L YVFG+D ATGGRAE+FAD+GSN P GYD F      D +FS MYS GL+MSP
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        DD+M T+  R+SE R  SSGSKRK+ G   ++ +I+R+A++Y N+QL  IA+WP  QRQDA+ TR E+V++L
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

A0A5A7TZA5 Retrotransposon protein4.2e-5561.49Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM
        MRGP+CSGFGWNDE KCI+ EK+++D W  SHP A GLLNK FPHYD+L YVF +D ATGGRAE+FADVGSN P GYD F      D +F  MYS+GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM

Query:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        SPD++MGT+  R+SEGR  SSGSK+K+GG  +++ +I+R+A++Y N+QL  IA+W   QRQDA+ TR EVVR+L
Subjt:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

A0A5A7U098 Retrotransposon protein3.0e-5362.64Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM
        MRGP+CSGFGWNDE KCI+VEK+L+D W  SHP A GLLNK F HYD+L YVFG+D ATGGRAE+F D+GSN PAGYD F      D  FS MYS GL+M
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFS-MYSQGLDM

Query:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        SPDD+M T+  R+SE R  SSGSKRK+ G V ++ +I+ +A++Y N+QL  IA+WP  QRQDAS TR E+VR+L
Subjt:  SPDDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

A0A5D3DPR5 Retrotransposon protein1.2e-5260.47Show/hide
Query:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP
        MRGP+CSGFGWNDE KCI+ EK+++D WSHP A GLLNK F HYD+L YVFG+D ATGGRAE+FAD+GSN P GYD        D +F  MYS GL+MSP
Subjt:  MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEF-SMYSQGLDMSP

Query:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL
        DD+M T+  R+SE R  SSGSKRK+ G   ++ +I+R+A++Y N+QL  IA+WP  QRQDA+ TR E+VR L
Subjt:  DDIMGTQFGRLSEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein3.0e-0529.63Show/hide
Query:  SGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATG
        +GF W+     +I + D+++++  +HP A     K  P Y +LC++FG++ + G
Subjt:  SGFGWNDELKCIIVEKDLYDSW--SHPTANGLLNKLFPHYDDLCYVFGRDCATG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCATCGTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATCATTGTCGAGAAAGACTTGTATGACAGTTGGAGTCATCCAACCGCGAATGGCCTCCT
AAACAAACTCTTTCCCCATTACGATGACCTTTGCTACGTCTTTGGAAGAGATTGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAG
GATATGATGGATTTCCCACTTATGACGGGAAGGATATGGAGTTTTCGATGTATAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGTACACAATTTGGTCGATTG
TCTGAGGGTAGGGCTGGTTCGAGTGGTTCGAAGAGGAAACAGGGAGGGCAGGTGTTGGAGGCGATAGAAATTATTCGCAGTGCCATGAAATATGCTAATGATCAGCTGAA
GGCCATTGCAAAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTTACACGTGTGGAAGTCGTTAGAAAACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCATCGTGTAGTGGGTTCGGTTGGAACGATGAGCTCAAATGCATCATTGTCGAGAAAGACTTGTATGACAGTTGGAGTCATCCAACCGCGAATGGCCTCCT
AAACAAACTCTTTCCCCATTACGATGACCTTTGCTACGTCTTTGGAAGAGATTGTGCAACAGGAGGTCGCGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAG
GATATGATGGATTTCCCACTTATGACGGGAAGGATATGGAGTTTTCGATGTATAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGTACACAATTTGGTCGATTG
TCTGAGGGTAGGGCTGGTTCGAGTGGTTCGAAGAGGAAACAGGGAGGGCAGGTGTTGGAGGCGATAGAAATTATTCGCAGTGCCATGAAATATGCTAATGATCAGCTGAA
GGCCATTGCAAAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTTACACGTGTGGAAGTCGTTAGAAAACTGTAG
Protein sequenceShow/hide protein sequence
MRGPSCSGFGWNDELKCIIVEKDLYDSWSHPTANGLLNKLFPHYDDLCYVFGRDCATGGRAETFADVGSNVPAGYDGFPTYDGKDMEFSMYSQGLDMSPDDIMGTQFGRL
SEGRAGSSGSKRKQGGQVLEAIEIIRSAMKYANDQLKAIAKWPKEQRQDASVTRVEVVRKL