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PI0000508 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000508
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNA polymerase II C-terminal domain phosphatase-like 1
Genome locationchr04:17650083..17650370
RNA-Seq ExpressionPI0000508
SyntenyPI0000508
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050638.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-0444.59Show/hide
Query:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA
        MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP    P   QS+AP ++
Subjt:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA

KAA0067419.1 tRNA modification GTPase MnmE [Cucumis melo var. makuwa]3.4e-0851.95Show/hide
Query:  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFWSEAVGRSSPATLIFIRS
        +K+TT IS  VDARIG  MDEWFR+ QTTPT  NP      A  RA  GA    R     SEA  +  PATL FIR+
Subjt:  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFWSEAVGRSSPATLIFIRS

TYK03082.1 Beta-galactosidase [Cucumis melo var. makuwa]2.1e-0539.05Show/hide
Query:  MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPAT
        MVSE+ I++TL + T  GN TK T     T+++  VDAR    M+EW      T        F + V+ + S+ P     GATRA    S+A+GR + AT
Subjt:  MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPAT

Query:  LIFIR
        L+FIR
Subjt:  LIFIR

TYK05873.1 uncharacterized protein E5676_scaffold432G00040 [Cucumis melo var. makuwa]1.9e-0642.55Show/hide
Query:  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL
        MVSE  ID+TLE+ T  GN T++     + V++  V+A+I  AM+EWF   QTTP       F S+AP RAA G  R     S   G+S   TL
Subjt:  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL

TYK07795.1 Beta-galactosidase [Cucumis melo var. makuwa]5.1e-0444.59Show/hide
Query:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA
        MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP    P   QS+AP ++
Subjt:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA

TrEMBL top hitse value%identityAlignment
A0A5A7U5T5 Beta-galactosidase2.5e-0444.59Show/hide
Query:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA
        MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP    P   QS+AP ++
Subjt:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA

A0A5A7VQC5 tRNA modification GTPase MnmE1.7e-0851.95Show/hide
Query:  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFWSEAVGRSSPATLIFIRS
        +K+TT IS  VDARIG  MDEWFR+ QTTPT  NP      A  RA  GA    R     SEA  +  PATL FIR+
Subjt:  TKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGAT---RACFFWSEAVGRSSPATLIFIRS

A0A5D3BW68 Beta-galactosidase1.0e-0539.05Show/hide
Query:  MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPAT
        MVSE+ I++TL + T  GN TK T     T+++  VDAR    M+EW      T        F + V+ + S+ P     GATRA    S+A+GR + AT
Subjt:  MVSEQGIDETLEDQTPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTT------PTFQNPVVFQ-SNAPSRAAAGATRACFFWSEAVGRSSPAT

Query:  LIFIR
        L+FIR
Subjt:  LIFIR

A0A5D3C1P7 Uncharacterized protein9.1e-0742.55Show/hide
Query:  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL
        MVSE  ID+TLE+ T  GN T++     + V++  V+A+I  AM+EWF   QTTP       F S+AP RAA G  R     S   G+S   TL
Subjt:  MVSEQGIDETLEDQTPVGNPTKD-----TTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATL

A0A5D3C8I9 Beta-galactosidase2.5e-0444.59Show/hide
Query:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA
        MVS++ I+  LE Q   T  GN T++T     TV+++ VDAR+  AMDEWF R Q TP    P   QS+AP ++
Subjt:  MVSEQGIDETLEDQ---TPVGNPTKDT-----TVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCAGAGCAAGGTATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGAAGGACACAACTGTAATTAGTGTCGTCGTCGATGCTCGGATTGGATT
TGCCATGGACGAATGGTTCCGCCGTTTTCAGACTACACCGACCTTCCAAAATCCGGTAGTTTTTCAGTCCAACGCACCTTCACGCGCCGCCGCTGGAGCAACACGCGCCT
GCTTTTTCTGGTCAGAAGCCGTCGGTCGATCCTCCCCTGCCACCCTTATCTTTATCCGCAGCTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCAGAGCAAGGTATCGATGAAACCCTAGAAGATCAAACACCTGTTGGAAACCCAACGAAGGACACAACTGTAATTAGTGTCGTCGTCGATGCTCGGATTGGATT
TGCCATGGACGAATGGTTCCGCCGTTTTCAGACTACACCGACCTTCCAAAATCCGGTAGTTTTTCAGTCCAACGCACCTTCACGCGCCGCCGCTGGAGCAACACGCGCCT
GCTTTTTCTGGTCAGAAGCCGTCGGTCGATCCTCCCCTGCCACCCTTATCTTTATCCGCAGCTGCTAG
Protein sequenceShow/hide protein sequence
MVSEQGIDETLEDQTPVGNPTKDTTVISVVVDARIGFAMDEWFRRFQTTPTFQNPVVFQSNAPSRAAAGATRACFFWSEAVGRSSPATLIFIRSC