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PI0000530 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000530
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr03:16270345..16270605
RNA-Seq ExpressionPI0000530
SyntenyPI0000530
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036579.1 MADS-box transcription factor PHERES 2-like [Cucumis melo var. makuwa]2.1e-1247.73Show/hide
Query:  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEV
        MSS+S+ T    +R+ENDK+ +G++++ D+S +CR+C GF ++Q+E P FLK +K S  VTLSDD+   SS+ E+ G A +GC LE+V
Subjt:  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEV

KAA0047417.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-0847.37Show/hide
Query:  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        RR + ++ +S      K DKS RC EC G+DHFQAE  T+LK +KK  N+TLSD+++ + +E E+ G AL+GC +E
Subjt:  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

KAA0051793.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.3e-1054.05Show/hide
Query:  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        ++KE DKS S S  K D+SF+C EC GF H+QAE  TFLK + KS  VTLSD+ES + S+ E  G  L+ C+LE
Subjt:  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

TYJ98064.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.0e-0846.91Show/hide
Query:  SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        S  Y ++  ++ DKS      K DKS RC EC G+ HFQAE PT+LK +KKS N+TL D+++ + SE E+ G AL  C  E
Subjt:  SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

TYK29861.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.4e-0850Show/hide
Query:  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEE
        T++   F+CREC GF H++AE PTFLK +KKS   TLS+++S + S+ EE   ALL C++E+
Subjt:  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEE

TrEMBL top hitse value%identityAlignment
A0A5D3BG63 Gag-proteinase polyprotein2.0e-0846.91Show/hide
Query:  SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        S  Y ++  ++ DKS      K DKS RC EC G+ HFQAE PT+LK +KKS N+TL D+++ + SE E+ G AL  C  E
Subjt:  SASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

A0A5D3C137 Gag-pol polyprotein5.1e-0947.37Show/hide
Query:  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        RR + ++ +S      K DKS RC EC G+DHFQAE  T+LK +KK  N+TLSD+++ + +E E+ G AL+GC +E
Subjt:  RRKENDKSVS--GSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

A0A5D3DD57 Gag-pol polyprotein2.1e-1054.05Show/hide
Query:  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE
        ++KE DKS S S  K D+SF+C EC GF H+QAE  TFLK + KS  VTLSD+ES + S+ E  G  L+ C+LE
Subjt:  RRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILE

A0A5D3DG15 MADS-box transcription factor PHERES 2-like1.0e-1247.73Show/hide
Query:  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEV
        MSS+S+ T    +R+ENDK+ +G++++ D+S +CR+C GF ++Q+E P FLK +K S  VTLSDD+   SS+ E+ G A +GC LE+V
Subjt:  MSSASYPT---KRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEV

A0A5D3E2N4 Gag-pol polyprotein1.1e-0850Show/hide
Query:  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEE
        T++   F+CREC GF H++AE PTFLK +KKS   TLS+++S + S+ EE   ALL C++E+
Subjt:  TKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTGCTTCATATCCTACTAAAAGAAGGAAGGAGAATGATAAGAGTGTGAGTGGTAGCCATACCAAGATCGACAAAAGTTTCAGGTGTCGCGAGTGTGGGGGCTT
TGATCATTTCCAAGCAGAGTCTCCAACCTTTTTAAAGACGCAAAAGAAGAGTTTTAACGTAACACTTTCTGATGATGAGTCGGATGCGAGTAGTGAAAATGAGGAGGACG
GTTGTGCATTGCTAGGGTGCATTTTAGAAGAAGTGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTGCTTCATATCCTACTAAAAGAAGGAAGGAGAATGATAAGAGTGTGAGTGGTAGCCATACCAAGATCGACAAAAGTTTCAGGTGTCGCGAGTGTGGGGGCTT
TGATCATTTCCAAGCAGAGTCTCCAACCTTTTTAAAGACGCAAAAGAAGAGTTTTAACGTAACACTTTCTGATGATGAGTCGGATGCGAGTAGTGAAAATGAGGAGGACG
GTTGTGCATTGCTAGGGTGCATTTTAGAAGAAGTGGTGTAG
Protein sequenceShow/hide protein sequence
MSSASYPTKRRKENDKSVSGSHTKIDKSFRCRECGGFDHFQAESPTFLKTQKKSFNVTLSDDESDASSENEEDGCALLGCILEEVV