CuGenDBv2

Gene ID	PI0000535
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr01:13164695..13165192
RNA-Seq Expression	PI0000535
Synteny	PI0000535
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]

6.1e-53

68.48

Show/hide

Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNSK G+GY+SSEP+RITGK K KVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI     RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

KAA0055891.1 uncharacterized protein E6C27_scaffold438G00090 [Cucumis melo var. makuwa]

7.9e-53

67.88

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEP+RITGK KVKVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D ++ +   SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

4.6e-53

68.48

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEPIRITGK K KV 
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]

4.6e-53

68.48

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEPIRITGK K KV 
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]

1.8e-52

67.88

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT +G DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY SSEP+RITGK KVKVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D ++ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2W9 Gag protease polyprotein

2.9e-53

68.48

Show/hide

Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNSK G+GY+SSEP+RITGK K KVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI     RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

A0A5A7UQP2 Integrase catalytic domain-containing protein

3.8e-53

67.88

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEP+RITGK KVKVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D ++ +   SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

A0A5A7V4F2 Reverse transcriptase domain-containing protein

2.2e-53

68.48

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEPIRITGK K KV 
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

A0A5D3BTY1 Ribonuclease H

2.2e-53

68.48

Show/hide

Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT EG DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY+SSEPIRITGK K KV 
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D K+ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

A0A5D3C783 Ribonuclease H

8.5e-53

67.88

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Query:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA
        ++KG AK IEK+ +EA LPE+RT +G DPKAYKLMAKAGYDFTTRTELKSVKIFDER ELSPTQK LQKQGY IPNS+ G+GY SSEP+RITGK KVKVA
Subjt:  MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVA

Query:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF
        + CHITV+E  D ++ +K  SQ S VF RI  S  RP VFQR+S    +D N+ S   STRLSAF
Subjt:  DICHITVDECNDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATAAAGGAAGGGCGAAAGGAATTGAGAAAGAGCGCATAGAAGCATGCCTTCCAGAAAAACGAACGGCAGAGGGAATTGACCCAAAAGCATATAAGTTGATGGCAAA
GGCGGGTTATGACTTTACAACCCGTACTGAGCTTAAAAGCGTGAAGATATTTGATGAAAGACATGAGCTTTCGCCTACGCAAAAGAACCTTCAAAAGCAAGGATATTTTA
TACCTAATTCAAAACCGGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTGGTAAAGAAAAAGTAAAAGTTGCTGACATATGCCACATTACTGTTGACGAATGC
AATGATTTTAAAAAAGACGAAAAAAGCGAAAGTCAAAGTAGTTTTGTTTTTTATCGTATCATCTCTTCTACTGCACGCCCTTTAGTTTTCCAGAGGTTGAGTATACCGAC
AAGGGAGGACAAAAATGAAGGGTCAGCTTCTGATTCCACCCGACTTTCTGCCTTTTAG

mRNA sequence

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Protein sequence

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MDKGRAKGIEKERIEACLPEKRTAEGIDPKAYKLMAKAGYDFTTRTELKSVKIFDERHELSPTQKNLQKQGYFIPNSKPGVGYKSSEPIRITGKEKVKVADICHITVDEC
NDFKKDEKSESQSSFVFYRIISSTARPLVFQRLSIPTREDKNEGSASDSTRLSAF

PI0000535 (gene) of Melon (PI 482460) v1 genome