; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000539 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000539
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:10111943..10112386
RNA-Seq ExpressionPI0000539
SyntenyPI0000539
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-3457.53Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+PAAKG L+K FPYYDDLSYVFG   A GA  ETFAD GS V   F DG  + D H+ +I T+YSQG+ MS DE+ G RAG++SE R     ++ KRG
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VI +  EF NDQLK I DW KEKRATEVEL  EV+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.3e-3559.86Show/hide
Query:  AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLF
        A K  L+K FPYYDDL YVFGK RA  AR ETFADVGS VP  F+G   +DD HD +I  MYSQG+ MSPDE+ G RAG++SE +     ++ K+G   +
Subjt:  AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLF

Query:  EPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
        E V+VI++ +EF NDQLKAIA+W KEKRATEVEL  EVMK L
Subjt:  EPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-3658.22Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+P  KG LNK FPYYDD+SYVFGK +A  AR ETFADVGS +P  F DG  + D H  +I TMYSQG+ MS DE+ GTRAG++SE R     ++ K+G
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VIR+ M+F NDQLKAIADW KEKRA +VEL   V+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.6e-3559.44Show/hide
Query:  SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGG
        S+PAAKG L+K FPYYDDLSYVFGK RA   R ETF+ VGS VP  F DG  + D H+ +I  MYSQG+ MS DE+ G RAG++SE R     ++ KRG 
Subjt:  SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGG

Query:  HLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMK
          +E V+VIR+VM+F N+QLK IADW K+KRATEVEL  EV+K
Subjt:  HLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.7e-3860.96Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VIR+VMEF N+QLKAIADW KEKRA EVE+  +V+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859538.2e-3960.96Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VIR+VMEF N+QLKAIADW KEKRA EVE+  +V+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

A0A5A7SQU2 Putative nuclease HARBI16.5e-3659.86Show/hide
Query:  AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLF
        A K  L+K FPYYDDL YVFGK RA  AR ETFADVGS VP  F+G   +DD HD +I  MYSQG+ MSPDE+ G RAG++SE +     ++ K+G   +
Subjt:  AAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDG-FSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGGHLF

Query:  EPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
        E V+VI++ +EF NDQLKAIA+W KEKRATEVEL  EVMK L
Subjt:  EPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

A0A5A7U0H7 Retrotransposon protein8.2e-3960.96Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+PAAKG L+K FPYYDDLSYVFGK RA GAR ETF +VGS V   F D   + D HD +I TMYSQG+ MSPDE+ G RAG++SE R     ++ KRG
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VIR+VMEF N+QLKAIADW KEKRA EVE+  +V+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

A0A5A7USN6 Putative nuclease HARBI14.2e-3559.44Show/hide
Query:  SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGG
        S+PAAKG L+K FPYYDDLSYVFGK RA   R ETF+ VGS VP  F DG  + D H+ +I  MYSQG+ MS DE+ G RAG++SE R     ++ KRG 
Subjt:  SYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRGG

Query:  HLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMK
          +E V+VIR+VM+F N+QLK IADW K+KRATEVEL  EV+K
Subjt:  HLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMK

A0A5D3CVB7 Retrotransposon protein2.9e-3658.22Show/hide
Query:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG
        +S+P  KG LNK FPYYDD+SYVFGK +A  AR ETFADVGS +P  F DG  + D H  +I TMYSQG+ MS DE+ GTRAG++SE R     ++ K+G
Subjt:  QSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGF-DGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDR-IQVEARGKRG

Query:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL
           +E V+VIR+ M+F NDQLKAIADW KEKRA +VEL   V+K L
Subjt:  GHLFEPVKVIRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCC
AGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACA
TGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTC
ATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTT
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCACAAAGTTATCCTGCAGCTAAGGGCTTCCTCAACAAAATGTTTCCTTATTATGATGACTTGTCCTATGTTTTTGGCAAAGGTCGGGCTATGGGAGCACGGCC
AGAGACCTTCGCTGATGTAGGGTCTACTGTACCAGGCGGCTTCGATGGCTTTTCTGTTGATGATCTTCATGATCCAGAGATCTCGACGATGTATAGTCAGGGACTAGACA
TGTCACCTGATGAGCTTATGGGCACACGAGCAGGTCGATCTAGTGAAGACAGAATTCAAGTGGAAGCAAGAGGAAAACGCGGTGGTCATCTGTTTGAACCCGTTAAGGTC
ATTAGGAATGTAATGGAATTTGCAAATGACCAGTTGAAGGCGATTGCAGATTGGCAAAAAGAGAAACGTGCAACAGAGGTCGAGCTACATGGGGAAGTCATGAAACACTT
GTAA
Protein sequenceShow/hide protein sequence
MFAQSYPAAKGFLNKMFPYYDDLSYVFGKGRAMGARPETFADVGSTVPGGFDGFSVDDLHDPEISTMYSQGLDMSPDELMGTRAGRSSEDRIQVEARGKRGGHLFEPVKV
IRNVMEFANDQLKAIADWQKEKRATEVELHGEVMKHL