CuGenDBv2

Gene ID	PI0000588
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Genome location	chr03:24077437..24078143
RNA-Seq Expression	PI0000588
Synteny	PI0000588
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN34118.1 hypothetical protein [Cucumis melo subsp. melo]

3.0e-61

70.17

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+     +RL+E  SD+SL G HVVDSA EEVGTSKTPV KP EQSL P  L EEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]

8.0e-62

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  LS+LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSSVI PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTS+TPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

5.7e-60

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  LS+LYL ARSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I P SQP+LPKN+GSNLGGK+I LVEAMAP LE +VKE   E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTS+TPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

TYK06433.1 hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa]

6.1e-62

70.17

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+     +RL+E  SD+SL G HVVDSA EEVGTSKTPV KP EQSL P  L EEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]

4.4e-60

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL ARSLEPCKHVT RF  WW TKH TYFEDNR HLVSSVI PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SD H KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTSKTPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQC9 PMD domain-containing protein

3.9e-62

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  LS+LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSSVI PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTS+TPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

A0A5A7TX42 Uncharacterized protein

2.8e-60

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  LS+LYL ARSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I P SQP+LPKN+GSNLGGK+I LVEAMAP LE +VKE   E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTS+TPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

A0A5D3C3D7 PMD domain-containing protein

2.9e-62

70.17

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+     +RL+E  SD+SL G HVVDSA EEVGTSKTPV KP EQSL P  L EEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

A0A5D3D7V4 PMD domain-containing protein

2.1e-60

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL ARSLEPCKHVT RF  WW TKH TYFEDNR HLVSSVI PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SD H KRP KKAK SGD+  GRG                     L+E  SD+SL G H VDSA EEVGTSKTPV KP EQSL P  LLEEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRG-------------------SRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

E5GCB9 PMD domain-containing protein

1.5e-61

70.17

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Query:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE
        N L+ WRICTRR  L +LYL  RSLEPCKHVT RF  WW TKH TYFEDNR HLVSS I PPSQP+LPKN+GSNLGGK+I LVEAMAP LE +VKEH  E
Subjt:  NALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKE

Query:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR
        SDS++SDRH KRP KKAK SGD+     +RL+E  SD+SL G HVVDSA EEVGTSKTPV KP EQSL P  L EEIR  +
Subjt:  SDSNRSDRHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGAAGAATGCATTACATCCTTGGAGGATATGTACGAGGCGTAGAATTTTATCTAAGTTATACCTGTTTGCCCGTTCATTGGAGCCTTGCAAGCATGTGACACCACG
ATTCAAACATTGGTGGGCCACGAAGCACAGAACCTATTTTGAGGATAATAGAGACCATTTGGTGAGTAGTGTCATTCTTCCTCCATCACAACCCAAACTACCCAAGAATC
AAGGAAGCAATCTAGGTGGCAAACAAATCTGTTTGGTTGAAGCAATGGCTCCTACCCTCGAGAGGCAAGTCAAGGAGCACAGTAAGGAGAGTGATAGCAATAGAAGCGAT
CGTCATTTGAAGAGACCTTCGAAGAAAGCAAAGGCATCAGGTGATTATTCCTGTGGAAGAGGCTCAAGACTTGTAGAGATATGTAGTGATGACTCTCTGATAGGGTCTCA
TGTTGTGGATTCAGCCCTTGAAGAAGTTGGTACCTCAAAGACACCAGTTGTCAAACCAGTTGAACAATCCTTGCATCCTCCTACTCTTCTCGAGGAGATTCGCGAAGCAA
GATGA

mRNA sequence

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Protein sequence

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MPKNALHPWRICTRRRILSKLYLFARSLEPCKHVTPRFKHWWATKHRTYFEDNRDHLVSSVILPPSQPKLPKNQGSNLGGKQICLVEAMAPTLERQVKEHSKESDSNRSD
RHLKRPSKKAKASGDYSCGRGSRLVEICSDDSLIGSHVVDSALEEVGTSKTPVVKPVEQSLHPPTLLEEIREAR

PI0000588 (gene) of Melon (PI 482460) v1 genome