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PI0000697 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000697
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:14446929..14448651
RNA-Seq ExpressionPI0000697
SyntenyPI0000697
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042481.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.9e-4642.81Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + I  +L  FT  QR++L+TLELLMN++KR+  TP+DT+HRIRQLAYF MIHE D VCRQS  MD++ FAIL HLLR  +GL+S EIV+VEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSD-------------------------------------------------------------------------RATRTR
        LHVL HDVKNRVIQ+ FV S                                                                          +AT   
Subjt:  LHVLVHDVKNRVIQRGFVWSD-------------------------------------------------------------------------RATRTR

Query:  AETFTDVGSNVPGGYEGFLVDDANDPEIPMTYSQGLDMSSDDIMDTQPGRSSEGRNASSGSKRKRGGQTAETVDIIHHC--RMAECTTLSGG
        A TF  V SN    YEGF + D N+ E P  YSQG+DMS +D+  ++P  + EGR   SGSKRKRG Q  + +++IH     ++  TT SGG
Subjt:  AETFTDVGSNVPGGYEGFLVDDANDPEIPMTYSQGLDMSSDDIMDTQPGRSSEGRNASSGSKRKRGGQTAETVDIIHHC--RMAECTTLSGG

KAA0048777.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-3970.83Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT +QRQ+L+TLELLMNN+KR+ HTP DT+HRIR+LAYF MIHE DLVCRQS RMD++ FAIL HLLR  +GL+S EIVDVEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWS
        LHVL HDVKNR+IQR F+ S
Subjt:  LHVLVHDVKNRVIQRGFVWS

KAA0055440.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-3965.12Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LTVFT ++RQ+L+TL+LLMNN++RI +TP DT+HRIRQ AYFCMIHE DLVCRQS RMD++ FAIL H L+T SG++S EI D+EEMV MF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSDRATRTRAE
        LHVL HDVKNRVIQR FVWS+     R +
Subjt:  LHVLVHDVKNRVIQRGFVWSDRATRTRAE

KAA0056587.1 retrotransposon protein [Cucumis melo var. makuwa]8.2e-4064.54Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT +QRQ+L+TLE LMN++K +  TP+DT+HRIRQLAYF MIHE D+VCR+S RMDK+ FAIL HLLRT SGL+S EIVDVEE+VAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSDRATRTRAETFTDVGSNVPGG
        LHVL HDVKNRVIQR FV S+   R R    T +  NVP G
Subjt:  LHVLVHDVKNRVIQRGFVWSDRATRTRAETFTDVGSNVPGG

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-3972.5Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT++QRQ+L+TLELLMNN+KR+ HTP DT+HRIR+LAYF MIHE DLVCRQS RMD++ FAIL HLLR  +GL+S EIVDVEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWS
        LHVL HDVKNRVIQR FV S
Subjt:  LHVLVHDVKNRVIQRGFVWS

TrEMBL top hitse value%identityAlignment
A0A5A7TLM6 Putative nuclease HARBI12.8e-4642.81Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + I  +L  FT  QR++L+TLELLMN++KR+  TP+DT+HRIRQLAYF MIHE D VCRQS  MD++ FAIL HLLR  +GL+S EIV+VEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSD-------------------------------------------------------------------------RATRTR
        LHVL HDVKNRVIQ+ FV S                                                                          +AT   
Subjt:  LHVLVHDVKNRVIQRGFVWSD-------------------------------------------------------------------------RATRTR

Query:  AETFTDVGSNVPGGYEGFLVDDANDPEIPMTYSQGLDMSSDDIMDTQPGRSSEGRNASSGSKRKRGGQTAETVDIIHHC--RMAECTTLSGG
        A TF  V SN    YEGF + D N+ E P  YSQG+DMS +D+  ++P  + EGR   SGSKRKRG Q  + +++IH     ++  TT SGG
Subjt:  AETFTDVGSNVPGGYEGFLVDDANDPEIPMTYSQGLDMSSDDIMDTQPGRSSEGRNASSGSKRKRGGQTAETVDIIHHC--RMAECTTLSGG

A0A5A7U3B3 Retrotransposon protein2.0e-3970.83Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT +QRQ+L+TLELLMNN+KR+ HTP DT+HRIR+LAYF MIHE DLVCRQS RMD++ FAIL HLLR  +GL+S EIVDVEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWS
        LHVL HDVKNR+IQR F+ S
Subjt:  LHVLVHDVKNRVIQRGFVWS

A0A5A7UJR9 Retrotransposon protein5.2e-4065.12Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LTVFT ++RQ+L+TL+LLMNN++RI +TP DT+HRIRQ AYFCMIHE DLVCRQS RMD++ FAIL H L+T SG++S EI D+EEMV MF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSDRATRTRAE
        LHVL HDVKNRVIQR FVWS+     R +
Subjt:  LHVLVHDVKNRVIQRGFVWSDRATRTRAE

A0A5A7UUT3 Retrotransposon protein1.2e-3972.5Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT++QRQ+L+TLELLMNN+KR+ HTP DT+HRIR+LAYF MIHE DLVCRQS RMD++ FAIL HLLR  +GL+S EIVDVEEMVAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWS
        LHVL HDVKNRVIQR FV S
Subjt:  LHVLVHDVKNRVIQRGFVWS

A0A5D3DLW1 Retrotransposon protein4.0e-4064.54Show/hide
Query:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF
        MD + +  +LT FT +QRQ+L+TLE LMN++K +  TP+DT+HRIRQLAYF MIHE D+VCR+S RMDK+ FAIL HLLRT SGL+S EIVDVEE+VAMF
Subjt:  MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMF

Query:  LHVLVHDVKNRVIQRGFVWSDRATRTRAETFTDVGSNVPGG
        LHVL HDVKNRVIQR FV S+   R R    T +  NVP G
Subjt:  LHVLVHDVKNRVIQRGFVWSDRATRTRAETFTDVGSNVPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGAAAGCTATTGCTAGAATACTAACCGTGTTCACAACCTCCCAACGTCAATTACTAATGACATTGGAGCTATTAATGAACAACCACAAGAGGATACAACATAC
ACCCTTCGACACTAAGCATAGAATTAGGCAGTTAGCGTACTTCTGCATGATTCATGAGTTAGACCTAGTCTGTCGTCAGAGTATTAGAATGGACAAAAAATGTTTTGCCA
TTCTATTCCACCTACTTAGGACTACTTCTGGATTAGCATCGGCAGAAATCGTCGATGTCGAGGAAATGGTCGCCATGTTCCTCCACGTACTGGTGCATGACGTGAAAAAT
CGAGTGATCCAAAGGGGATTTGTGTGGTCTGATCGTGCTACAAGAACACGTGCAGAGACATTCACCGATGTGGGGTCGAATGTGCCAGGAGGATACGAAGGATTTCTCGT
TGACGATGCTAACGATCCAGAGATCCCTATGACATATAGTCAGGGATTAGACATGTCGTCTGATGACATCATGGACACACAACCTGGTCGATCAAGTGAAGGTAGGAATG
CTTCGAGCGGAAGCAAGAGGAAGCGGGGAGGACAGACGGCTGAAACTGTCGACATCATTCACCATTGTAGAATGGCCGAATGTACAACGTTAAGTGGAGGATGCCTCGCA
TGCAGAAGTCATGAAATAGTTGTAGGGAATCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCGAAAGCTATTGCTAGAATACTAACCGTGTTCACAACCTCCCAACGTCAATTACTAATGACATTGGAGCTATTAATGAACAACCACAAGAGGATACAACATAC
ACCCTTCGACACTAAGCATAGAATTAGGCAGTTAGCGTACTTCTGCATGATTCATGAGTTAGACCTAGTCTGTCGTCAGAGTATTAGAATGGACAAAAAATGTTTTGCCA
TTCTATTCCACCTACTTAGGACTACTTCTGGATTAGCATCGGCAGAAATCGTCGATGTCGAGGAAATGGTCGCCATGTTCCTCCACGTACTGGTGCATGACGTGAAAAAT
CGAGTGATCCAAAGGGGATTTGTGTGGTCTGATCGTGCTACAAGAACACGTGCAGAGACATTCACCGATGTGGGGTCGAATGTGCCAGGAGGATACGAAGGATTTCTCGT
TGACGATGCTAACGATCCAGAGATCCCTATGACATATAGTCAGGGATTAGACATGTCGTCTGATGACATCATGGACACACAACCTGGTCGATCAAGTGAAGGTAGGAATG
CTTCGAGCGGAAGCAAGAGGAAGCGGGGAGGACAGACGGCTGAAACTGTCGACATCATTCACCATTGTAGAATGGCCGAATGTACAACGTTAAGTGGAGGATGCCTCGCA
TGCAGAAGTCATGAAATAGTTGTAGGGAATCCCTGA
Protein sequenceShow/hide protein sequence
MDSKAIARILTVFTTSQRQLLMTLELLMNNHKRIQHTPFDTKHRIRQLAYFCMIHELDLVCRQSIRMDKKCFAILFHLLRTTSGLASAEIVDVEEMVAMFLHVLVHDVKN
RVIQRGFVWSDRATRTRAETFTDVGSNVPGGYEGFLVDDANDPEIPMTYSQGLDMSSDDIMDTQPGRSSEGRNASSGSKRKRGGQTAETVDIIHHCRMAECTTLSGGCLA
CRSHEIVVGNP