; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000758 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000758
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSWIB domain-containing protein
Genome locationchr11:455854..459008
RNA-Seq ExpressionPI0000758
SyntenyPI0000758
Gene Ontology termsGO:0043504 - mitochondrial DNA repair (biological process)
GO:0097552 - mitochondrial double-strand break repair via homologous recombination (biological process)
GO:0000262 - mitochondrial chromosome (cellular component)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]7.3e-2268.35Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G   K++  SPALA FLG SE SRPEA+KQIWSYIKLNNLQNPA++ +INCD KLKA+FDGR+ VG+ E+ K LSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

XP_008460088.1 PREDICTED: protein TRI1-like [Cucumis melo]3.6e-2168.35Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G   K+L  SP LA FLGQSEISR +AIKQIWSYIKLNNLQN  D+ +INCD KLKA+F GR+ VG+ E+ KFLSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]4.8e-2167.09Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G  FK++  SPALA FLG SE SR EA+KQIWSYIKLN+LQNPA++ +INCD KLKA+FDGR+ VG+ E+ K LSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]2.8e-2157.28Show/hide
Query:  ASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSP
        AS  + + K    G K    +   G  FK++  SPALA FLG SE SRPEA+KQIWSYIKLNNLQNPA++ +INCD KLKA+FDGR+ VG+ E+ K LS 
Subjt:  ASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSP

Query:  HLV
        H V
Subjt:  HLV

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]4.8e-2168.42Show/hide
Query:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        FK+ P SPALA FLG SE SR EA+KQIW+YIKLNNLQ+PAD+ +INCD KLKA+FDGR+ VG  E+ K L+PH V
Subjt:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

TrEMBL top hitse value%identityAlignment
A0A1S3CBA0 protein TRI1-like1.8e-2168.35Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G   K+L  SP LA FLGQSEISR +AIKQIWSYIKLNNLQN  D+ +INCD KLKA+F GR+ VG+ E+ KFLSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

A0A3S3Q837 Upstream activation factor subunit UAF30-like protein isoform X24.3e-2050.86Show/hide
Query:  NPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRD
        NPR      RS  A+ + KT   R  G              K +P SPA+ SFLG  EISR EAIK+IW YIKLN+LQNPA++ +INCD KLKA+FDGRD
Subjt:  NPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRD

Query:  IVGVREVLKFLSPHLV
         VG+ E+ + LSPH +
Subjt:  IVGVREVLKFLSPHLV

A0A5D3DMJ2 Protein TRI1-like1.8e-2168.35Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G   K+L  SP LA FLGQSEISR +AIKQIWSYIKLNNLQN  D+ +INCD KLKA+F GR+ VG+ E+ KFLSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

A0A6J1KEZ2 upstream activation factor subunit spp27-like4.3e-2050.4Show/hide
Query:  QPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVK
        Q  SS +  +P+ + +      AS  + T K    G K        G  FK++  SPALA FLG SE SR EA+KQIWSYIKLN+LQNPA++ +INCD K
Subjt:  QPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVK

Query:  LKALFDGRDIVGVREVLKFLSPHLV
        LKA+FDGR+ VG+ E+ K LSPH V
Subjt:  LKALFDGRDIVGVREVLKFLSPHLV

A0A6J1KHF5 upstream activation factor subunit spp27-like2.3e-2167.09Show/hide
Query:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        G  FK++  SPALA FLG SE SR EA+KQIWSYIKLN+LQNPA++ +INCD KLKA+FDGR+ VG+ E+ K LSPH V
Subjt:  GRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

SwissProt top hitse value%identityAlignment
O02101 SWI/SNF chromatin-remodeling accessory subunit 21.9e-0444.9Show/hide
Query:  PALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALF
        P LA  LG +  +RP+ I+ +W YIK + LQ+P +R  INCD  L   F
Subjt:  PALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALF

O74503 Upstream activation factor subunit spp279.7e-0935.29Show/hide
Query:  SESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKAL
        +E GK P   +R  + K   EE         G +  ++        K +  SP LA FLG  ++SRP+ +K++W YIK ++LQ+P D+  I CD KLK++
Subjt:  SESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKAL

Query:  FD
        F+
Subjt:  FD

Q05024 Protein TRI19.7e-0936.61Show/hide
Query:  RLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVRE
        R  R +    ESK+   +R   K  S         K L S+P L  FLG  E+ R + +K IW YIK ++LQNP DR +I CD K++ +F  +  + +  
Subjt:  RLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVRE

Query:  VLKFLSPHLVNP
        + K L+ HL NP
Subjt:  VLKFLSPHLVNP

Q08747 Upstream activation factor subunit UAF306.3e-0830.25Show/hide
Query:  RFQRWGVELIGEEEEAAMENGLREEEEWRGKLVLVQPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQ
        RF+R   +L+ E    A+E           K + V  +SS   KN    +  H  K     SK            S I  R      +  S +LAS LG+
Subjt:  RFQRWGVELIGEEEEAAMENGLREEEEWRGKLVLVQPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQ

Query:  SEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNP
         E++R E ++++W+YIK +NLQNP ++ +I CD KL+ +  G+    + E+ K L+ H+  P
Subjt:  SEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNP

Q9FMT4 SWI/SNF complex component SNF12 homolog6.5e-0538.89Show/hide
Query:  SPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNP
        S AL   LG    +RP  I  IW Y+K   LQNP D    NCD  L+ +F G + +    V + +S HL  P
Subjt:  SPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNP

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.7e-2154.43Show/hide
Query:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNPV
        FKT P S  LASF G+ E++R  A+K++W Y+KL+NLQNPA++ +I+CD KLK +FDG+D VG+ E++K LSPH    V
Subjt:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNPV

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.3e-1336.21Show/hide
Query:  NPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRD
        +P    RL R+  ++ ES         P   ++   RG   K  P SP +   +   EI+R +A+K+IW+YIK ++LQ+P ++ +I CD KLK +F+GRD
Subjt:  NPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRD

Query:  IVGVREVLKFLSPHLV
         VG  E+ K + PH +
Subjt:  IVGVREVLKFLSPHLV

AT2G35605.1 SWIB/MDM2 domain superfamily protein3.1e-1853.42Show/hide
Query:  KTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPH
        K +P S  LA+F+G++E+SR  A+K+IW YIKLNNLQNP ++ +I CD +LK +F G+D VG  E+ K LS H
Subjt:  KTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPH

AT3G03590.1 SWIB/MDM2 domain superfamily protein2.1e-1957.89Show/hide
Query:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV
        FK  P SP LA FLG  E SR +AIK IW+YIK ++LQNPAD+ +I CD  LK +F+G+D VG  E+ K LSPH V
Subjt:  FKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLV

AT4G34290.1 SWIB/MDM2 domain superfamily protein3.0e-1331.5Show/hide
Query:  LVQPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCD
        ++ P S     N  T+ R+ R+  ++  + +       P   ++ +E     K  P S A+   +G  EI R +A+K+IW+YIK ++LQ+P ++  I CD
Subjt:  LVQPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISRPEAIKQIWSYIKLNNLQNPADRMKINCD

Query:  VKLKALFDGRDIVGVREVLKFLSPHLV
         KLK +F+G++ VG  E+ K + PH +
Subjt:  VKLKALFDGRDIVGVREVLKFLSPHLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTGGTGAAAGGTTTCAAAGATGGGGAGTTGAGTTGATTGGTGAAGAAGAAGAAGCAGCAATGGAGAATGGGTTGAGAGAAGAAGAGGAGTGGAGAGGAAAACT
TGTGTTGGTCCAACCTAAGTCGAGCGAAAGCGGCAAAAACCCTAGAACTGACCGTCGTCTTCATCGGAGCAAAATGGCCTCAGAGGAATCTAAAACCCTCAAGTGCCGCC
GTTTGGGGCCAAAAATCGGAAGCCGGATCAAAGAAAGGGGTCGGGCTTTTAAGACCCTACCAAGTTCTCCGGCTCTCGCCAGCTTCCTCGGCCAGTCCGAGATTTCGCGC
CCTGAAGCCATCAAGCAAATATGGTCCTACATCAAGCTGAATAACCTCCAGAACCCAGCTGATAGGATGAAGATCAATTGTGATGTAAAGCTGAAGGCTTTATTTGATGG
AAGAGATATAGTGGGAGTGCGTGAAGTTCTAAAATTTCTATCCCCTCATCTTGTGAATCCTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTGGTGAAAGGTTTCAAAGATGGGGAGTTGAGTTGATTGGTGAAGAAGAAGAAGCAGCAATGGAGAATGGGTTGAGAGAAGAAGAGGAGTGGAGAGGAAAACT
TGTGTTGGTCCAACCTAAGTCGAGCGAAAGCGGCAAAAACCCTAGAACTGACCGTCGTCTTCATCGGAGCAAAATGGCCTCAGAGGAATCTAAAACCCTCAAGTGCCGCC
GTTTGGGGCCAAAAATCGGAAGCCGGATCAAAGAAAGGGGTCGGGCTTTTAAGACCCTACCAAGTTCTCCGGCTCTCGCCAGCTTCCTCGGCCAGTCCGAGATTTCGCGC
CCTGAAGCCATCAAGCAAATATGGTCCTACATCAAGCTGAATAACCTCCAGAACCCAGCTGATAGGATGAAGATCAATTGTGATGTAAAGCTGAAGGCTTTATTTGATGG
AAGAGATATAGTGGGAGTGCGTGAAGTTCTAAAATTTCTATCCCCTCATCTTGTGAATCCTGTTTAACCTAAGCTTTCATTGCATGCATTGCCTTAGCTATTCTAACAAT
TCTCTCTAAACCTCTCTTCCAAATCCTTGAAGATATTTTGTTATGTTTTGCTTGGCTGATCCTATGCCATCGCCTGTACTTTTTGGTTTTACTATGATTTAGGAAGAGAG
GGTGTTTCTTGCTTAGACATTGTTGCCCCTTAGTATTCTACAATAGTTGTAAAGATGGTAATTGTAGTTTAATGTTATGTAGTAAATGTAATTTGCTGTATGAATTCTTA
AATTTTCAATTCTGTGTGTGATCCTTATTTTGAACCAAAACATGAAGAAAATTATGTTTCTAAA
Protein sequenceShow/hide protein sequence
MKIGERFQRWGVELIGEEEEAAMENGLREEEEWRGKLVLVQPKSSESGKNPRTDRRLHRSKMASEESKTLKCRRLGPKIGSRIKERGRAFKTLPSSPALASFLGQSEISR
PEAIKQIWSYIKLNNLQNPADRMKINCDVKLKALFDGRDIVGVREVLKFLSPHLVNPV