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PI0000768 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000768
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:4046043..4047501
RNA-Seq ExpressionPI0000768
SyntenyPI0000768
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]6.3e-4758.7Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N +RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N S S+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-4658.7Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MT+LLTSFVQG  +KV KCGVCGL+GHPNDKCP ++E+ N  R+YDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT AISK++GKGKL AQPDHANVSAISLRSGKIL    + E+K+ S P  L  EN  KEE  E N S S+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-4657.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT  ISK++GKGKL AQPDHANVS ISLRS KIL  P + E+KV S P  L  +N+ KEE  E N S S+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.7e-4758.7Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N+SSS+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.4e-4657.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT  ISK++GKGKL AQPDHANVS ISLRS KIL  P + E+KV S P  L  +N+ KEE  E N S S+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032918.1e-4858.7Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N +R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P + E+KV S    L  +N+ KEE  E N+SSS+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

A0A1S4E3R2 uncharacterized protein LOC1079919101.2e-4657.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N ++KYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA P+S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT  ISK++GKGKL AQPDHANVS ISLRS KIL  P + E+KV S P  L  +N+ KEE  E N S S+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

A0A5A7V0L2 Retrotransposon gag protein6.4e-4557.07Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MTT LTSFVQG  +KV KCGVCGL+GH NDKCP ++E+ N +R+Y+  GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+Q+T AISK++GKGKLPAQP+HANVSAISLRSGKIL  P +EE KV S P  L  +N+ KEE  E N SSS+ K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEE-KVPSNPDLLIDENKKKEENKENNASSSSLKGTK

A0A5A7VE49 Retrotransposon gag protein3.4e-4657.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N +R+YDPHGNTYN+GWRDNP LRWGN+NQ+  QA  +S NQ                   
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA------------------

Query:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
             +M+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P + E+KV S    L  +N+ KEEN E N S S++K  K
Subjt:  -----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

A0A5A7VQ60 Retrotransposon gag protein1.7e-4557.38Show/hide
Query:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA-------------------
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N +R+YDPH NTYN+GWRDNPNLRWGN+NQ+ TQA  +S NQ                    
Subjt:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQA-------------------

Query:  ----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK
            +M+QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL  P + E+KV S P  L  +N+ KEE  E N S S+ K  K
Subjt:  ----KMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPS-EEKVPSNPDLLIDENKKKEENKENNASSSSLKGTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGA
AGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAG
CAACTCCTTCTTCATACAATCAAGCAAAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGT
GCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAA
AGAAAACAATGCCTCTTCTTCTTCTTTAAAAGGAACCAAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGA
AGAGGCAAATGCCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAACAATAATCAACAACCCACGCAAG
CAACTCCTTCTTCATACAATCAAGCAAAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGT
GCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCATCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAA
AGAAAACAATGCCTCTTCTTCTTCTTTAAAAGGAACCAAGGATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANAIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPSSYNQAKMSQLTNAISKLEGKGKLPAQPDHANVS
AISLRSGKILQPPPSEEKVPSNPDLLIDENKKKEENKENNASSSSLKGTKD