CuGenDBv2

Gene ID	PI0000799
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	selenoprotein H
Genome location	chr03:3876569..3881787
RNA-Seq Expression	PI0000799
Synteny	PI0000799
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	IPR011893 - Selenoprotein, Rdx-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8652181.1 hypothetical protein Csa_022241 [Cucumis sativus]

1.1e-78

93.6

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKR+KNQEE+  VEKPAPATSR+TRSSARLAANSKAD TVTELPKSKKAKRAPKENGKVEEVE+KEV+VD GL KLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKEL+MDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

XP_004138763.1 selenoprotein H [Cucumis sativus]

1.1e-78

93.6

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKR+KNQEE+  VEKPAPATSR+TRSSARLAANSKAD TVTELPKSKKAKRAPKENGKVEEVE+KEV+VD GL KLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKEL+MDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

XP_008445096.1 PREDICTED: selenoprotein H [Cucumis melo]

3.5e-80

95.35

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKRSKNQEEE A+EKPAPATSRVTRSSARLAANSKAD TVTELPKSKKAKRAPKENGKVEEVE+KEV+VD GLEK DKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

XP_023536837.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

1.2e-64

79.55

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC
        MAP+KRSK QE+E A  KP PA+SR TR S RLAANSKAD TV E    LPK KKAKRAPKENGK EEVE++  ++DA  EKL  +AK+R VVIEHCKQC
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        QSFKKRAI+VQ GLE GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDM+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

XP_038886764.1 selenoprotein H [Benincasa hispida]

9.4e-73

87.5

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADS----TVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC
        MAPRKRSKNQE+EPA EK APA+SRVTRSSARLAANSKADS     VTE  KSKKAKRAPKENGKV+EVE++ VEVDA LEKLDKD K+RTVVIEHCKQC
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADS----TVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        QSFKKRAIQVQ GLENGVPGITV+LNPD PRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDM+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

5.5e-79

93.6

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKR+KNQEE+  VEKPAPATSR+TRSSARLAANSKAD TVTELPKSKKAKRAPKENGKVEEVE+KEV+VD GL KLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKEL+MDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

A0A1S3BBW1 selenoprotein H

1.7e-80

95.35

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKRSKNQEEE A+EKPAPATSRVTRSSARLAANSKAD TVTELPKSKKAKRAPKENGKVEEVE+KEV+VD GLEK DKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

A0A6J1GHF7 selenoprotein H-like isoform X1

1.3e-64

78.98

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC
        MAP+KRSK QE+E AV KP PA+SRVTR S RLA NSKAD TV E    LPK KKAKR PKENGK EEVE++  ++DA  EKL  +AK+R VVIEHCKQC
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        QSFKKRA++VQ GLE GVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDM+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

A0A6J1K9R2 selenoprotein H-like

4.3e-63

77.09

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Query:  MAPRKRSKNQEEEPAV---EKPAPATSRVTRSSARLAANSKAD----STVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHC
        MAPRKRSKNQE++PA    EKPAP +S VTR S RLA NS AD      VTELPKSKK KRAPKENGK +EV ++  E+DA  +KL KDAK+RTVVIE C
Subjt:  MAPRKRSKNQEEEPAV---EKPAPATSRVTRSSARLAANSKAD----STVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHC

Query:  KQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        KQCQSFKKRAIQVQ+GLENGV GITVLLNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMKEL+M+EVISDIIEKIKG
Subjt:  KQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

A0A6J1KP64 selenoprotein H-like isoform X1

2.1e-62

77.27

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Query:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC
        MAP+KRSK QE+E A  KP P +SRVTR S RLAANSKAD TV E    LPK KKAKRAPKEN K EEVE++  ++DA  EKL  +AK+R VVIEHCKQC
Subjt:  MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTE----LPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG
        QSFKKRA++VQ GLE GVPGITVLLNPDK RRGCFEIRSEDGEKFISLLDMKRPFT+MKELDM+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

SwissProt top hits

e value

%identity

Alignment

Q3UQA7 Selenoprotein H

2.7e-06

31.91

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Query:  LEKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKELDMDEVISDI
        ++K +K A+  TVVIEHC   + + + A  +   L+   P + V +NP KPRRG FE+   RS++    +     K P  ++K  +  EV+ ++
Subjt:  LEKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKELDMDEVISDI

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

5.4e-34

53.8

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Query:  RVTRSSARLAANS----KADSTVTELPKSKKAKR--APKENGKVEEV-----EDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENG
        R TRS  +   +S    K +S   +  K+ KAK   A K+  K EEV     +++E + DA  ++ D D+  + +VIEHCKQC+SFK+RA +V+ GLE  
Subjt:  RVTRSSARLAANS----KADSTVTELPKSKKAKR--APKENGKVEEV-----EDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENG

Query:  VPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIK
        VPGI V +NPDKPRRGCFEIR E GE FISLL MKRPFT MKEL+M+EVI+DI+EKIK
Subjt:  VPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIK

AT4G31360.1 selenium binding

3.7e-35

51.08

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Query:  PRKRSKNQEEEPAVEKPAPATSRVTRS------SARLAANSKADSTVTELPKSKKAKR--------APKENGKVEEVEDKEVEVDAGLEKLDKDAKSRT-
        P K+SK   EE A      A+SRVTRS      S      +KA  + T+ P +KKAKR          K+  K EEVE+ E  V+  +EK + + +  T 
Subjt:  PRKRSKNQEEEPAVEKPAPATSRVTRS------SARLAANSKADSTVTELPKSKKAKR--------APKENGKVEEVEDKEVEVDAGLEKLDKDAKSRT-

Query:  --VVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIK
          +VIEHCKQC +FK RAIQV+  LE  VPG+TV LNP+KPRRGCFEIR E G+ FISLL+MKRPF  MK LDM+EVI DII+K+K
Subjt:  --VVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGCCCAGGAAGCGAAGCAAGAACCAGGAAGAAGAACCGGCGGTGGAGAAGCCGGCCCCGGCGACGTCCAGGGTGACTCGGAGTTCCGCTCGGCTGGCGGCGAACTC
CAAGGCCGATTCGACTGTCACGGAGTTGCCGAAGAGTAAGAAGGCGAAACGTGCTCCGAAGGAGAATGGGAAGGTCGAGGAGGTTGAAGATAAAGAAGTGGAAGTTGATG
CTGGTTTGGAGAAACTTGACAAGGATGCGAAGAGTCGAACGGTTGTGATTGAACATTGCAAACAGTGCCAATCATTCAAGAAAAGGGCAATTCAGGTGCAAACTGGTCTT
GAGAATGGTGTTCCTGGAATTACTGTGCTGCTTAACCCTGATAAGCCAAGAAGGGGTTGCTTTGAAATCCGGAGCGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACAT
GAAGCGTCCATTTACCCGCATGAAGGAACTGGACATGGATGAAGTCATTTCAGATATCATTGAGAAGATAAAAGGATGA

mRNA sequence

Show/hide mRNA sequence

GGAAAATGAAAGAAAATTGACACGTGGATGTGAGTTTTAATGCAGCCGAGGTTAATGGTATTTACTATGAAGAAGAAAAGAAATAAAAAGAGGCGACGTGACAATAAATG
GTAGTGGAGTCTGGCGCCATTTCTGGGACTTCGTGCCGCCACTTTCTTCCAAAGAAGAAACCAAGTGGAACTGCGTGGGCGTCGTACGACCATCAAGTCAACGGCCACGA
TCCATTCTCACACTCAAAATCCATCTCCACCGTTTCTTCAAATTCCCACCGCCGTCCCATAGCGCGGGAAAAACACCCCAACTCCGCTTCTGTGTATCACTACAAACCAA
CGGTCACAGCTTCGAAACCCACCCATAACTTTACCTTCTTCCTCAAACTACCTCTTTTTTCCTTTCCTTTCTAGGGTTTCACTTCTCCTTTGATGGCGCCCAGGAAGCGA
AGCAAGAACCAGGAAGAAGAACCGGCGGTGGAGAAGCCGGCCCCGGCGACGTCCAGGGTGACTCGGAGTTCCGCTCGGCTGGCGGCGAACTCCAAGGCCGATTCGACTGT
CACGGAGTTGCCGAAGAGTAAGAAGGCGAAACGTGCTCCGAAGGAGAATGGGAAGGTCGAGGAGGTTGAAGATAAAGAAGTGGAAGTTGATGCTGGTTTGGAGAAACTTG
ACAAGGATGCGAAGAGTCGAACGGTTGTGATTGAACATTGCAAACAGTGCCAATCATTCAAGAAAAGGGCAATTCAGGTGCAAACTGGTCTTGAGAATGGTGTTCCTGGA
ATTACTGTGCTGCTTAACCCTGATAAGCCAAGAAGGGGTTGCTTTGAAATCCGGAGCGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGTCCATTTACCCG
CATGAAGGAACTGGACATGGATGAAGTCATTTCAGATATCATTGAGAAGATAAAAGGATGATGAAAGGCTTTAATGAAAAATTGCCTTTCTAAGGATGCAATGGTTTTTT
TTGTGATGGTTTGAAGCTAACCAACTAGAGTAGCTTTGATGGTGGAAAATTTGCTAATCATCATTTGCCAATATCAATATTGCCTCCTCACTTGGGATAACTGCAATGGT
AAAGCCATCAGGTTTGAACAAACATGGTGAAATATTTTTTTGGTTTAAGCTTCATAATGAACGAGTCTATCTTTGAAGAAGGCTTGTCCTTTGTATTAGTAGTAGTAGAA
ACCTACCCTTACCTAAGAGGAGGGTGGCTCTATATTGCATCCTTGAATTGTGTATTTTTGTGTGAATCAATGGAGTTTTATTTGCACCTTTTTTTATTTTTTTCTTGCAA
GAGTTCTAAACCAGAAAACTAGGAGCGAGATTCCTTTGGACCAACTATGTCCCTAAGGCAAGATTAGAGACGAGCATTGGTTTTAGGCTCAAATTGATGCCAAACATCAA
TTTGTTGATTTTGATGAGTAGTGGTTGTTGATTTTGGGAGGATCTGTTGAACCAATTGGTCACATGGATGGTTGGTTGGTTATTTGGTTCTTAGTTGCTTATGGAACAAT
TGATTGGTTGATTGAGTCTATTTTTTAGTTCACCGGCTGCCGAGGGCATAAAATCAATTGTCTGATATCGATTTAACGATTTGAGTTGATCATCCCTAGGAAGTATAGAG
ACTTTTCGAAATGCAACTTTTGTTAAAGCATCAAGCAGGCAATTGTATCGCCCACTTGAAGTTGTTACAAAGGTCTATGGAAG

Protein sequence

Show/hide protein sequence

MAPRKRSKNQEEEPAVEKPAPATSRVTRSSARLAANSKADSTVTELPKSKKAKRAPKENGKVEEVEDKEVEVDAGLEKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGL
ENGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMDEVISDIIEKIKG

PI0000799 (gene) of Melon (PI 482460) v1 genome