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PI0000819 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000819
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr01:16027446..16027946
RNA-Seq ExpressionPI0000819
SyntenyPI0000819
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]4.7e-1556.96Show/hide
Query:  SSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM
        SSYNQI  TL+ +  NN+EWD+D FD+ RGGR + +EG+D+NVMV  Q QMTA+NNLL+ M  LQVNAA  S  +  Q+
Subjt:  SSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM

KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]4.9e-2048.33Show/hide
Query:  FQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRR-GGRSRG--DEG
        F+ +DRENL+D WS  KR+VKAC H+GI +C+L+E           QT D VF+GG+L++SYNQ K  L+ M+SN++E  +D   +++  G +RG  DEG
Subjt:  FQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRR-GGRSRG--DEG

Query:  MDKNVMVALQWQMTAINNLL
        MD+N MV LQ Q+T +N LL
Subjt:  MDKNVMVALQWQMTAINNLL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]7.0e-2748.63Show/hide
Query:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNR------RGGRS
        M+F+Q+DRENL DVW RFKRM+K CPH+ I EC+L+E           Q+A+ VF GGML+SSYNQIK  L+ M SN++EW ++ F +R      +G R 
Subjt:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNR------RGGRS

Query:  RGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM
        R ++G+D ++MVALQ Q+  + N+L+SMA+LQVN    SV    Q+
Subjt:  RGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]6.1e-3952.41Show/hide
Query:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GI EC+ +E           Q  + +F+GGML+SSYNQIK TL+ M +N++EWD+  F +R  GR++  EG+
Subjt:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGM

Query:  DKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQMMTWDVWDAAVLIILMHAHSTLKLSRS
        DK+V+V LQ QM A+NNLL+SM + QVNAA   +HA  Q+  + VWD A+L  L HAHS +KLSR+
Subjt:  DKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQMMTWDVWDAAVLIILMHAHSTLKLSRS

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]9.5e-1640.94Show/hide
Query:  MVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDN------RRGGRSRGDEGMDKNVMVALQWQMTA
        M+K C H+ IL C++IE           Q  DAVF+GGML+ S N IK TL+ MVSN++EW +++F +       R  + R ++G + N M+ LQ Q+T 
Subjt:  MVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDN------RRGGRSRGDEGMDKNVMVALQWQMTA

Query:  INNLLKSMAILQVNAAGGSVHAANQMM
        +N LL+SMA+ Q+NA G S+   +Q++
Subjt:  INNLLKSMAILQVNAAGGSVHAANQMM

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein3.0e-3952.41Show/hide
Query:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GI EC+ +E           Q  + +F+GGML+SSYNQIK TL+ M +N++EWD+  F +R  GR++  EG+
Subjt:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGM

Query:  DKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQMMTWDVWDAAVLIILMHAHSTLKLSRS
        DK+V+V LQ QM A+NNLL+SM + QVNAA   +HA  Q+  + VWD A+L  L HAHS +KLSR+
Subjt:  DKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQMMTWDVWDAAVLIILMHAHSTLKLSRS

A0A0A0L0Y4 Uncharacterized protein4.6e-1640.94Show/hide
Query:  MVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDN------RRGGRSRGDEGMDKNVMVALQWQMTA
        M+K C H+ IL C++IE           Q  DAVF+GGML+ S N IK TL+ MVSN++EW +++F +       R  + R ++G + N M+ LQ Q+T 
Subjt:  MVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDN------RRGGRSRGDEGMDKNVMVALQWQMTA

Query:  INNLLKSMAILQVNAAGGSVHAANQMM
        +N LL+SMA+ Q+NA G S+   +Q++
Subjt:  INNLLKSMAILQVNAAGGSVHAANQMM

A0A5A7TUE1 Uncharacterized protein2.4e-2048.33Show/hide
Query:  FQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRR-GGRSRG--DEG
        F+ +DRENL+D WS  KR+VKAC H+GI +C+L+E           QT D VF+GG+L++SYNQ K  L+ M+SN++E  +D   +++  G +RG  DEG
Subjt:  FQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRR-GGRSRG--DEG

Query:  MDKNVMVALQWQMTAINNLL
        MD+N MV LQ Q+T +N LL
Subjt:  MDKNVMVALQWQMTAINNLL

A0A5D3CC26 Uncharacterized protein3.4e-2748.63Show/hide
Query:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNR------RGGRS
        M+F+Q+DRENL DVW RFKRM+K CPH+ I EC+L+E           Q+A+ VF GGML+SSYNQIK  L+ M SN++EW ++ F +R      +G R 
Subjt:  MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIE-----------QTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNR------RGGRS

Query:  RGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM
        R ++G+D ++MVALQ Q+  + N+L+SMA+LQVN    SV    Q+
Subjt:  RGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM

A0A5D3CSC7 Uncharacterized protein2.3e-1556.96Show/hide
Query:  SSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM
        SSYNQI  TL+ +  NN+EWD+D FD+ RGGR + +EG+D+NVMV  Q QMTA+NNLL+ M  LQVNAA  S  +  Q+
Subjt:  SSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGMDKNVMVALQWQMTAINNLLKSMAILQVNAAGGSVHAANQM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTCCAGCAAAAAGATAGAGAAAACCTACATGATGTGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCTTGAGTGCATATTGATAGA
GCAAACTGCTGATGCTGTGTTTTTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGTGACGCTGAACATAATGGTCAGCAACAACAAAGAATGGGATGAAGATG
ATTTCGACAATCGTCGAGGAGGACGATCAAGAGGCGATGAAGGAATGGATAAGAACGTCATGGTGGCGTTGCAATGGCAAATGACTGCGATAAACAATTTACTCAAGTCT
ATGGCAATATTGCAAGTCAATGCTGCGGGAGGCTCTGTGCATGCGGCAAACCAAATGATGACATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGATGCATGCCCA
CTCAACACTGAAACTGTCGCGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTCCAGCAAAAAGATAGAGAAAACCTACATGATGTGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCTTGAGTGCATATTGATAGA
GCAAACTGCTGATGCTGTGTTTTTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGTGACGCTGAACATAATGGTCAGCAACAACAAAGAATGGGATGAAGATG
ATTTCGACAATCGTCGAGGAGGACGATCAAGAGGCGATGAAGGAATGGATAAGAACGTCATGGTGGCGTTGCAATGGCAAATGACTGCGATAAACAATTTACTCAAGTCT
ATGGCAATATTGCAAGTCAATGCTGCGGGAGGCTCTGTGCATGCGGCAAACCAAATGATGACATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGATGCATGCCCA
CTCAACACTGAAACTGTCGCGTTCGTAA
Protein sequenceShow/hide protein sequence
MSFQQKDRENLHDVWSRFKRMVKACPHNGILECILIEQTADAVFLGGMLKSSYNQIKVTLNIMVSNNKEWDEDDFDNRRGGRSRGDEGMDKNVMVALQWQMTAINNLLKS
MAILQVNAAGGSVHAANQMMTWDVWDAAVLIILMHAHSTLKLSRS