; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0000850 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000850
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description30S ribosomal protein S16
Genome locationchr02:2281785..2284384
RNA-Seq ExpressionPI0000850
SyntenyPI0000850
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450874.1 PREDICTED: 30S ribosomal protein S16 [Cucumis melo]2.7e-6493.08Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTPEKKPTD SNG+ GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

XP_011659994.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus]3.3e-6292.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFR+G+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTP KKPTDGSN   G+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]3.0e-6393.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTPE KPTD S+ KDG+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]2.5e-6290.77Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRF TP+K   D ++ KDGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]2.3e-6394.62Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        R VDPLSGRFVTPE KPTD S+GKDGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

TrEMBL top hitse value%identityAlignment
A0A0A0LZG2 Uncharacterized protein1.6e-6292.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFR+G+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTP KKPTDGSN   G+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

A0A1S3BQ70 30S ribosomal protein S161.3e-6493.08Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTPEKKPTD SNG+ GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

A0A5D3CDW9 30S ribosomal protein S161.3e-6493.08Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTPEKKPTD SNG+ GDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial1.4e-6393.85Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVR+RLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRFVTPE KPTD S+ KDG+ADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like1.2e-6290.77Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAAD RSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQRILFRAGVLPPPPMVAMARKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDPLSGRF TP+K   D ++ KDGDADS
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

SwissProt top hitse value%identityAlignment
A5V9P7 30S ribosomal protein S161.6e-1954.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        M V IRL+R G K +P+YR++ AD RSPRDG  +E +G YNPL  +D  KR+ L+ +R K+WLSVGAQP++ V R L  AGV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV

A8LMC0 30S ribosomal protein S166.1e-1952.38Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLP
        M ++IRL+R G K +PFYR++AAD R PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P++ V R+L  A VLP
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLP

B3PR16 30S ribosomal protein S166.1e-1953.66Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        M ++IRL+R G K +P+Y V+ AD RSPRDG+ LE LG +NP+  +D  KR+ LN ER+K+WL  GAQP++ V R L  AGV
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV

O65686 30S ribosomal protein S16-1, chloroplastic4.1e-3152.68Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial9.0e-5574.62Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAAD RSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDP++GR+V  E K  + ++ +  + D+
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 162.9e-3252.68Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+KYWLSVGAQP++ V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

AT5G56940.1 Ribosomal protein S16 family protein6.4e-5674.62Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAAD RSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPS+PVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDT

Query:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS
        RPVDP++GR+V  E K  + ++ +  + D+
Subjt:  RPVDPLSGRFVTPEKKPTDGSNGKDGDADS

ATCG00050.1 ribosomal protein S167.7e-0935.8Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV
        +V++RL R G K +  YR++A DVR  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  +AG+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATGTCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCT
AGGTTACTATAATCCCCTACCAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGAACCCGTGC
AGCGTATTCTTTTTAGAGCAGGGGTACTTCCACCGCCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTC
GTCACTCCAGAGAAGAAGCCAACTGATGGTTCCAATGGTAAAGATGGTGATGCCGATTCATAG
mRNA sequenceShow/hide mRNA sequence
GTGAGAAGTGGAGGCGCCACTTCCGTTCTGTAATCCATCGTCATTTCAATTTTGCGAATTTTCAAGATTTTTGTAGGGTTTTTACGAGCTCAAAAATGGTGGTTCGAATT
CGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATGTCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCC
CCTACCAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGAACCCGTGCAGCGTATTCTTTTTA
GAGCAGGGGTACTTCCACCGCCCCCAATGGTTGCAATGGCACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTCGTCACTCCAGAGAAG
AAGCCAACTGATGGTTCCAATGGTAAAGATGGTGATGCCGATTCATAGTTTTCTTTCAGAAAAATCTCTGGCTCTGGAATCATTCAAATGTGATGTCCAACTCGTCCTGT
TGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATAGGGAATTAGAAAAAGCCAAGTAGTTTCAGTTTATTCTGGAACAT
TAAAATGGAGTCTGTAGATATTATCAATGTCCAATCCTCCAGTACCAAGGCATAGTCGGGTTGTTGGACTGAGCTTATCTCACTGAAGATTAGCCATTACGTTGAGAAAA
CATGATCTTGTTGTCTAATTTAAACAAGACTACATCTCTGTTTTGGTCTTCCTTTGTTATGTTATGTTGATTAAAACGAGAGAAATATCATTTTGCTTTTCTAGTTGCCA
GATTTTGAAAACACCATATTTTATCACTTTTTGTTCATTTGATACTTATGTACACTGATTTGCTGAGGTGAGTTAATCTTCCATCTTGAAAATCTTCTATTTGAGGCGAG
GAGTGGAGTTGTTAAAGGCTCGAGAGTTGTGAACTCTTGGAGTTGTACAATGTAAC
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADVRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRF
VTPEKKPTDGSNGKDGDADS