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PI0000866 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000866
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr12:15984009..15985589
RNA-Seq ExpressionPI0000866
SyntenyPI0000866
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057858.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-2180.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

TYJ98540.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-2180.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

TYK04336.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]2.5e-2078.79Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYL+KWKNLPVEETSWE VEDLEAWKQKI++F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

TYK07955.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2080.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYLIKWKNLPVEETSWE VEDLE WKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

TYK07955.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0857.58Show/hide
Query:  SAQSLSDFYGKGTICKGPHVARECPNRTAFYAFQAALASDSDDKNGRAEDEDVQIEG-DYPRVGAL
        S Q+LS+      ICKGPH+ARECPN+TAF AFQA+L SDSD++  + E E  Q E  D PR+GAL
Subjt:  SAQSLSDFYGKGTICKGPHVARECPNRTAFYAFQAALASDSDDKNGRAEDEDVQIEG-DYPRVGAL

TYK07955.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-2078.79Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + LNQK ED++VEEIL + VR+GRRP RRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

TrEMBL top hitse value%identityAlignment
A0A5A7URR9 Reverse transcriptase4.1e-2180.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

A0A5A7VG74 Reverse transcriptase1.2e-2078.79Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + LNQK ED++VEEIL + VR+GRRP RRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

A0A5D3BFH0 Reverse transcriptase4.1e-2180.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYL+KWKNLPVEETSWE VEDLEAWKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

A0A5D3C8Z6 Reverse transcriptase9.1e-2180.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VR+GRRPTRRIHEYLIKWKNLPVEETSWE VEDLE WKQKIE+F+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

A0A5D3C8Z6 Reverse transcriptase1.0e-0857.58Show/hide
Query:  SAQSLSDFYGKGTICKGPHVARECPNRTAFYAFQAALASDSDDKNGRAEDEDVQIEG-DYPRVGAL
        S Q+LS+      ICKGPH+ARECPN+TAF AFQA+L SDSD++  + E E  Q E  D PR+GAL
Subjt:  SAQSLSDFYGKGTICKGPHVARECPNRTAFYAFQAALASDSDDKNGRAEDEDVQIEG-DYPRVGAL

A0A5D3C8Z6 Reverse transcriptase1.2e-2080.3Show/hide
Query:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR
        + L+QK ED+DVEEIL + VRKGRRPTRRIHEYL+KWKNLPVEE+SWE VEDLEAW QKIEEF+LR
Subjt:  LSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPVEETSWEHVEDLEAWKQKIEEFQLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGATAGTGCACAAAGTTTGTCGGATTTCTATGGAAAAGGCACCATATGTAAGGGGCCGCACGTGGCGAGAGAATGTCCGAATCGGACTGCCTTCTACGCCTT
TCAGGCGGCCTTAGCCTCAGACTCGGATGACAAGAATGGTCGAGCAGAGGATGAAGATGTCCAAATAGAAGGCGATTACCCCAGGGTAGGGGCCCTAAGTCTGAACCAAA
AGGAAGAAGACAGAGATGTTGAAGAAATCCTTACCGACTGGGTAAGGAAGGGCAGAAGACCCACGAGGAGAATCCACGAATACCTGATCAAGTGGAAGAATCTCCCCGTG
GAAGAGACCAGTTGGGAACACGTCGAAGACCTAGAAGCTTGGAAGCAAAAGATCGAAGAATTTCAGCTTCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGATAGTGCACAAAGTTTGTCGGATTTCTATGGAAAAGGCACCATATGTAAGGGGCCGCACGTGGCGAGAGAATGTCCGAATCGGACTGCCTTCTACGCCTT
TCAGGCGGCCTTAGCCTCAGACTCGGATGACAAGAATGGTCGAGCAGAGGATGAAGATGTCCAAATAGAAGGCGATTACCCCAGGGTAGGGGCCCTAAGTCTGAACCAAA
AGGAAGAAGACAGAGATGTTGAAGAAATCCTTACCGACTGGGTAAGGAAGGGCAGAAGACCCACGAGGAGAATCCACGAATACCTGATCAAGTGGAAGAATCTCCCCGTG
GAAGAGACCAGTTGGGAACACGTCGAAGACCTAGAAGCTTGGAAGCAAAAGATCGAAGAATTTCAGCTTCGCTAG
Protein sequenceShow/hide protein sequence
MDKDSAQSLSDFYGKGTICKGPHVARECPNRTAFYAFQAALASDSDDKNGRAEDEDVQIEGDYPRVGALSLNQKEEDRDVEEILTDWVRKGRRPTRRIHEYLIKWKNLPV
EETSWEHVEDLEAWKQKIEEFQLR