CuGenDBv2

Gene ID	PI0000869
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr07:16650721..16651179
RNA-Seq Expression	PI0000869
Synteny	PI0000869
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046553.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-48

69.18

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPFAE  + L +    ILKE+FTTPLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

KAA0048626.1 uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa]

4.6e-47

68.49

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPF E  + L V    ILKE+FT PLTK++KGEAK+IEK+ I+A LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

KAA0057579.1 uncharacterized protein E6C27_scaffold497G00510 [Cucumis melo var. makuwa]

1.6e-47

68.49

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPF E  + L V   +ILKE+FTTPLTK++KGEAK+I+K+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

4.6e-47

68.24

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPFAE  +   V    ILKE+FT PLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPELI
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E I
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPELI

TYK06279.1 uncharacterized protein E5676_scaffold157G00630 [Cucumis melo var. makuwa]

4.1e-48

69.18

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S PTVL Y PL RR+KGESPFAE  + L V    ILKE+FT PLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TSN4 Ty3-gypsy retrotransposon protein

2.0e-48

69.18

Show/hide

Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPFAE  + L +    ILKE+FTTPLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

A0A5A7U320 Uncharacterized protein

2.2e-47

68.49

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPF E  + L V    ILKE+FT PLTK++KGEAK+IEK+ I+A LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

A0A5A7UVK7 Uncharacterized protein

7.6e-48

68.49

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPF E  + L V   +ILKE+FTTPLTK++KGEAK+I+K+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

A0A5A7V4F2 Reverse transcriptase domain-containing protein

2.2e-47

68.24

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S P VL Y PL RRKKGESPFAE  +   V    ILKE+FT PLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPELI
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E I
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPELI

A0A5D3C7G5 Uncharacterized protein

2.0e-48

69.18

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Query:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD
        P  +++A  Q++ S PTVL Y PL RR+KGESPFAE  + L V    ILKE+FT PLTK++KGEAK+IEK+ +EA LPE+RT EGFDPKAYKLMAKAGYD
Subjt:  PTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYD

Query:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE
        FTTRT+LKSVKIFDER E SPTQKKL+KQGY IPNSR+ +GY+S E
Subjt:  FTTRTKLKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTGAATTACCGACAAACAAAAGGGTAGCAGTCCCTCAAGAAAAAGCCTCAAAACCCACCGTTTTATGCTACAATCCACTGTACCGACGTAAGAAGGGAGAATCACC
ATTTGCAGAAGGTTTGCAAAAATTAGCAGTTGGAGGTGTCAGAATATTAAAGGAAAGCTTCACCACACCACTTACCAAGATGGATAAAGGAGAGGCGAAAAGAATCGAGA
AAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGGCGGAGGGATTTGACCCAAAAGCATATAAGTTAATGGCAAAGGCGGGTTATGACTTTACAACCCGTACTAAG
CTTAAAAGCGTGAAGATATTTGATGAAAGGCATGAGTTTTCTCCTACGCAAAAGAAGCTTAAAAAACAAGGATATTTTATACCTAATTCAAGATCAGAAGTTGGGTATAA
GTCTCCTGAGTTGATTTAA

mRNA sequence

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Protein sequence

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MSELPTNKRVAVPQEKASKPTVLCYNPLYRRKKGESPFAEGLQKLAVGGVRILKESFTTPLTKMDKGEAKRIEKESIEACLPEKRTAEGFDPKAYKLMAKAGYDFTTRTK
LKSVKIFDERHEFSPTQKKLKKQGYFIPNSRSEVGYKSPELI

PI0000869 (gene) of Melon (PI 482460) v1 genome