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PI0000889 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000889
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr09:12694066..12694722
RNA-Seq ExpressionPI0000889
SyntenyPI0000889
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.9e-4276.27Show/hide
Query:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQLQNNRRL
        D+SDSSDEDN+LN+ Q+PQ  R L    YNQED++IRMKVDL TFN R++VEKFLDW KNVEN FDYAN  +HKKV+LVA KLQGGASAWWDQLQNNRRL
Subjt:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQLQNNRRL

Query:  FGKQPIKSWSKMLRLMKK
        FGKQP++SW KMLRLMKK
Subjt:  FGKQPIKSWSKMLRLMKK

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]2.3e-2337.33Show/hide
Query:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK
        S   RL L+E ++ E+      +   + +L   +  I            H       R +  P  PPRN    N+     QE+Q R++            
Subjt:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK

Query:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ
                DSD+SD D    ++Q P+  R              +MK+DL TFN +++VE FLD  KNVEN FDY NTP+ KKV+LVAFK+Q GASAWWDQ
Subjt:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ

Query:  LQNNRRLFGKQPIKSWSKMLRLMKK
        L+ N R  GKQPI+SW +MLRLM++
Subjt:  LQNNRRLFGKQPIKSWSKMLRLMKK

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]2.3e-2337.33Show/hide
Query:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK
        S   RL L+E ++ E+      +   + +L   +  I            H       R +  P  PPRN    N+     QE+Q R++            
Subjt:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK

Query:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ
                DSD+SD D    ++Q P+  R              +MK+DL TFN +++VE FLD  KNVEN FDY NTP+ KKV+LVAFK+Q GASAWWDQ
Subjt:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ

Query:  LQNNRRLFGKQPIKSWSKMLRLMKK
        L+ N R  GKQPI+SW +MLRLM++
Subjt:  LQNNRRLFGKQPIKSWSKMLRLMKK

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]3.9e-2336.25Show/hide
Query:  NQRLQLVEQAIVELPKGQS----DMQQSIVDLTNLIARIHVQPIKENREEVAPIPPPRN-VPTTNQERLNQ-QEVQPRNKVVHIHNNQLYGKNLPCYMM-
        N+  +  E+  V  PK  +     +++S+ DL N   R+       NR E  P PPPRN +   N +R  + +  + R  V +++N +   +  P Y + 
Subjt:  NQRLQLVEQAIVELPKGQS----DMQQSIVDLTNLIARIHVQPIKENREEVAPIPPPRN-VPTTNQERLNQ-QEVQPRNKVVHIHNNQLYGKNLPCYMM-

Query:  -------------------DDSDSSDED-NMLNVRQDPQARR---RLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVR
                           DDS S DE  NM N   + +A R   R+ +R     D K  MK+DL  ++ + N+E FLDW K+ EN F+Y +TP+ KKV 
Subjt:  -------------------DDSDSSDED-NMLNVRQDPQARR---RLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVR

Query:  LVAFKLQGGASAWWDQLQNNRRLFGKQPIKSWSKMLRLMK
        LVA KL+ GASAWWDQL+ NR+  GKQP++SW KM +L+K
Subjt:  LVAFKLQGGASAWWDQLQNNRRLFGKQPIKSWSKMLRLMK

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]4.1e-3364.8Show/hide
Query:  NQER--------LNQQEVQPRNKVVHIHNNQLYGKNLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWT
        NQER        +NQ+ +  RN+ +HIHNN+LYG N+P   + DSDSSDEDN+LN+ Q+PQ  +RLG R Y QED++IRMKVDL TFN R++VEKFLDW 
Subjt:  NQER--------LNQQEVQPRNKVVHIHNNQLYGKNLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWT

Query:  KNVENLFDYANTPKHKKVRLVAFKL
        KNVEN FDYANTPKHKKVRLVA KL
Subjt:  KNVENLFDYANTPKHKKVRLVAFKL

TrEMBL top hitse value%identityAlignment
A0A5D3BB35 CCHC-type domain-containing protein4.2e-2368.18Show/hide
Query:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGAS
        DDSDSSDEDN+LN+ Q+PQ   RL  R Y QED++I MKVDL TF+ R++VEKFLDW K +EN+FDY NTP+HKK++LVA KLQGGAS
Subjt:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGAS

A0A5D3DIZ0 Uncharacterized protein9.3e-2349.08Show/hide
Query:  MQQSIVDLTNLIARIHVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGKNLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSR
        MQQSIVDLTNL  RIHVQP+ E       I PPRN    NQE        PR++ VHIHNNQLYG NL  Y++DDS+SSDEDN+LN+ Q+PQ  RRL  R
Subjt:  MQQSIVDLTNLIARIHVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGKNLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSR

Query:  LYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVA----FKLQGG
         Y QED++IRMK          N  KF  W             P   KV LV     FK+ GG
Subjt:  LYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVA----FKLQGG

A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein1.4e-4276.27Show/hide
Query:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQLQNNRRL
        D+SDSSDEDN+LN+ Q+PQ  R L    YNQED++IRMKVDL TFN R++VEKFLDW KNVEN FDYAN  +HKKV+LVA KLQGGASAWWDQLQNNRRL
Subjt:  DDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQLQNNRRL

Query:  FGKQPIKSWSKMLRLMKK
        FGKQP++SW KMLRLMKK
Subjt:  FGKQPIKSWSKMLRLMKK

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X11.1e-2337.33Show/hide
Query:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK
        S   RL L+E ++ E+      +   + +L   +  I            H       R +  P  PPRN    N+     QE+Q R++            
Subjt:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK

Query:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ
                DSD+SD D    ++Q P+  R              +MK+DL TFN +++VE FLD  KNVEN FDY NTP+ KKV+LVAFK+Q GASAWWDQ
Subjt:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ

Query:  LQNNRRLFGKQPIKSWSKMLRLMKK
        L+ N R  GKQPI+SW +MLRLM++
Subjt:  LQNNRRLFGKQPIKSWSKMLRLMKK

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X21.1e-2337.33Show/hide
Query:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK
        S   RL L+E ++ E+      +   + +L   +  I            H       R +  P  PPRN    N+     QE+Q R++            
Subjt:  SRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARI------------HVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGK

Query:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ
                DSD+SD D    ++Q P+  R              +MK+DL TFN +++VE FLD  KNVEN FDY NTP+ KKV+LVAFK+Q GASAWWDQ
Subjt:  NLPCYMMDDSDSSDEDNMLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQ

Query:  LQNNRRLFGKQPIKSWSKMLRLMKK
        L+ N R  GKQPI+SW +MLRLM++
Subjt:  LQNNRRLFGKQPIKSWSKMLRLMKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTGGAAGCCTCCAGAAACCAACGCTTGCAGTTGGTGGAACAAGCCATTGTAGAACTCCCAAAGGGGCAATCAGATATGCAACAATCGATAGTCGATTTGACCAA
TCTCATTGCTCGAATTCATGTGCAACCCATCAAAGAAAATAGAGAAGAAGTCGCACCAATTCCACCACCAAGAAATGTCCCTACAACAAATCAAGAACGACTGAATCAAC
AAGAAGTTCAACCAAGAAACAAAGTCGTACACATCCACAACAATCAACTCTATGGAAAGAACCTACCATGCTACATGATGGATGATTCTGACTCTTCCGATGAAGACAAT
ATGTTGAATGTACGTCAAGATCCGCAAGCTCGAAGAAGACTGGGTTCTCGACTATACAACCAAGAAGATAAAAAAATAAGGATGAAAGTGGATCTTTCTACATTCAATGA
ACGAGTGAACGTTGAAAAATTCCTTGATTGGACTAAGAATGTAGAGAACCTTTTTGACTACGCTAATACTCCAAAACATAAGAAGGTCAGGTTGGTGGCCTTCAAGCTCC
AAGGCGGCGCTAGTGCCTGGTGGGATCAACTACAAAATAACAGGCGACTATTTGGTAAACAACCTATTAAAAGCTGGTCGAAAATGCTAAGGCTCATGAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTGGAAGCCTCCAGAAACCAACGCTTGCAGTTGGTGGAACAAGCCATTGTAGAACTCCCAAAGGGGCAATCAGATATGCAACAATCGATAGTCGATTTGACCAA
TCTCATTGCTCGAATTCATGTGCAACCCATCAAAGAAAATAGAGAAGAAGTCGCACCAATTCCACCACCAAGAAATGTCCCTACAACAAATCAAGAACGACTGAATCAAC
AAGAAGTTCAACCAAGAAACAAAGTCGTACACATCCACAACAATCAACTCTATGGAAAGAACCTACCATGCTACATGATGGATGATTCTGACTCTTCCGATGAAGACAAT
ATGTTGAATGTACGTCAAGATCCGCAAGCTCGAAGAAGACTGGGTTCTCGACTATACAACCAAGAAGATAAAAAAATAAGGATGAAAGTGGATCTTTCTACATTCAATGA
ACGAGTGAACGTTGAAAAATTCCTTGATTGGACTAAGAATGTAGAGAACCTTTTTGACTACGCTAATACTCCAAAACATAAGAAGGTCAGGTTGGTGGCCTTCAAGCTCC
AAGGCGGCGCTAGTGCCTGGTGGGATCAACTACAAAATAACAGGCGACTATTTGGTAAACAACCTATTAAAAGCTGGTCGAAAATGCTAAGGCTCATGAAAAAATGA
Protein sequenceShow/hide protein sequence
MDVEASRNQRLQLVEQAIVELPKGQSDMQQSIVDLTNLIARIHVQPIKENREEVAPIPPPRNVPTTNQERLNQQEVQPRNKVVHIHNNQLYGKNLPCYMMDDSDSSDEDN
MLNVRQDPQARRRLGSRLYNQEDKKIRMKVDLSTFNERVNVEKFLDWTKNVENLFDYANTPKHKKVRLVAFKLQGGASAWWDQLQNNRRLFGKQPIKSWSKMLRLMKK