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PI0000936 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000936
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:6379289..6379681
RNA-Seq ExpressionPI0000936
SyntenyPI0000936
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041444.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-2752.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MYNQG   S +D+MG+R     E R  SSGSKRKR GH+ ++ ++IR++++Y N+QL  IAEWP  Q +D + TR  +V QL+ IPEL+ +D    MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL +PN +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-2752.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+ G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ M+Y N+QL  IAEWP  Q +D T TR  IV QL+ IPEL+ +D    MRI+
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL++P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

KAA0054687.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-2752.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY++G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ ++Y N+QL  IAEWP  Q +D T TR  IV QL+ IPEL+ +D    MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL++P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

KAA0055439.1 retrotransposon protein [Cucumis melo var. makuwa]5.9e-2751.16Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+QG   S +D+MG+R  R  E +  SSGSKRKR GH+V++ ++IR+ ++Y N+QL  I EWP  Q +D + TR  +V QL+ IPEL+ +D  H MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        M NV DMKAFL +P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-3260.77Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+QG     +DIMG+RP+RS+E RTGSSGSKRK+GG  VE +E+IR+VM+++ND+LKAI EW   Q +D +     +V QLQ IPELSR D V  M+IL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDNA
        M NV DMKAFL I +ELKLDYC +I QDNA
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDNA

TrEMBL top hitse value%identityAlignment
A0A5A7TDD6 Retrotransposon protein9.8e-2852.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MYNQG   S +D+MG+R     E R  SSGSKRKR GH+ ++ ++IR++++Y N+QL  IAEWP  Q +D + TR  +V QL+ IPEL+ +D    MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL +PN +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

A0A5A7TYQ6 Retrotransposon protein1.3e-2752.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+ G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ M+Y N+QL  IAEWP  Q +D T TR  IV QL+ IPEL+ +D    MRI+
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL++P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

A0A5A7UJB1 Retrotransposon protein2.2e-2752.71Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY++G   SP+D+M +R  R SE R  SSGSKRKR GH  ++ +++R+ ++Y N+QL  IAEWP  Q +D T TR  IV QL+ IPEL+ +D    MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        MRNV DMKAFL++P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

A0A5A7UPP6 Retrotransposon protein2.8e-2751.16Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+QG   S +D+MG+R  R  E +  SSGSKRKR GH+V++ ++IR+ ++Y N+QL  I EWP  Q +D + TR  +V QL+ IPEL+ +D  H MRIL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDN
        M NV DMKAFL +P+ +K  YC +ILQ+N
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDN

A0A5A7V469 Retrotransposon protein1.7e-3260.77Show/hide
Query:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL
        MY+QG     +DIMG+RP+RS+E RTGSSGSKRK+GG  VE +E+IR+VM+++ND+LKAI EW   Q +D +     +V QLQ IPELSR D V  M+IL
Subjt:  MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRIL

Query:  MRNVIDMKAFLQIPNELKLDYCMVILQDNA
        M NV DMKAFL I +ELKLDYC +I QDNA
Subjt:  MRNVIDMKAFLQIPNELKLDYCMVILQDNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGG
CCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAA
CTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTC
TTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAACCAAGGACGTCCAAAGTCACCTGAGGACATAATGGGATCACGACCTGAACGATCGAGTGAGTGTAGGACGGGTTCTAGCGGATCGAAAAGGAAGCGGGGAGG
CCATAATGTGGAAGCTGTGGAAGTCATTCGCAGCGTCATGAAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCCGAAAGAACAATGGGAAGACGAAACTACAA
CTCGTGCGACAATCGTTAGTCAATTACAGGAAATCCCTGAACTATCAAGACTCGACATGGTGCACTGTATGCGGATACTTATGCGAAACGTGATTGATATGAAAGCGTTC
TTGCAGATACCCAACGAGCTTAAGTTGGACTACTGCATGGTCATTCTGCAAGATAATGCTTAA
Protein sequenceShow/hide protein sequence
MYNQGRPKSPEDIMGSRPERSSECRTGSSGSKRKRGGHNVEAVEVIRSVMKYANDQLKAIAEWPKEQWEDETTTRATIVSQLQEIPELSRLDMVHCMRILMRNVIDMKAF
LQIPNELKLDYCMVILQDNA