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PI0000977 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000977
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:15993572..15994672
RNA-Seq ExpressionPI0000977
SyntenyPI0000977
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047785.1 putative retrotransposon protein [Cucumis melo var. makuwa]2.4e-2365.62Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHAEGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST
        M+  EKSL++LHGMLK AELNIK S E LM++KGKNPKKREQ QG          +K  +  EGE YHCKEI HWKR CP+YLEELKKNKG VPST
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHAEGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]2.2e-3268.14Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE
        M+ +EKSL++LHGMLK A+LNIKFS EVLMVQKGKNPKKRE+DQGKG++ V  KASKVDA A               EGECY CK+IEHW RKCPIYLEE
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPSTLD
        LKKNKG +PST D
Subjt:  LKKNKGCVPSTLD

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.4e-2559.46Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE
        M+GM+KSL+ELHGMLK  +LNIK S +VLM+QKGKNPKK+E DQGKG+  VA K SKVDA                 EGE YHCK+I +WKR CP+YL+ 
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPST
        LKKNK  VP T
Subjt:  LKKNKGCVPST

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]7.4e-2568.09Show/hide
Query:  AELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST
        A+LNIK S EVLMVQKGKNPKKRE+DQGKG++ V  KASKVDA A               EGECY CK+IEHWKRKCP+YLEELKKNKG +PST
Subjt:  AELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]2.0e-2256.76Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDA---------------HAEGECYHCKEIEHWKRKCPIYLEE
        M  M+KSLS+LHGM K A+LNIK + E+LM+QKGKNPK R QDQGKG + V  K SKVD                  E ECYHCK+I HW+R  P+YLEE
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDA---------------HAEGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPST
        LK NKG VP T
Subjt:  LKKNKGCVPST

TrEMBL top hitse value%identityAlignment
A0A5A7U2A2 Putative retrotransposon protein1.2e-2365.62Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHAEGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST
        M+  EKSL++LHGMLK AELNIK S E LM++KGKNPKKREQ QG          +K  +  EGE YHCKEI HWKR CP+YLEELKKNKG VPST
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHAEGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST

A0A5A7UN47 Uncharacterized protein1.0e-3268.14Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE
        M+ +EKSL++LHGMLK A+LNIKFS EVLMVQKGKNPKKRE+DQGKG++ V  KASKVDA A               EGECY CK+IEHW RKCPIYLEE
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPSTLD
        LKKNKG +PST D
Subjt:  LKKNKGCVPSTLD

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-2559.46Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE
        M+GM+KSL+ELHGMLK  +LNIK S +VLM+QKGKNPKK+E DQGKG+  VA K SKVDA                 EGE YHCK+I +WKR CP+YL+ 
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPST
        LKKNK  VP T
Subjt:  LKKNKGCVPST

A0A5D3C6L2 Putative retrotransposon protein3.6e-2568.09Show/hide
Query:  AELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST
        A+LNIK S EVLMVQKGKNPKKRE+DQGKG++ V  KASKVDA A               EGECY CK+IEHWKRKCP+YLEELKKNKG +PST
Subjt:  AELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHA---------------EGECYHCKEIEHWKRKCPIYLEELKKNKGCVPST

A0A5D3CZL7 Putative polyprotein9.8e-2356.76Show/hide
Query:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDA---------------HAEGECYHCKEIEHWKRKCPIYLEE
        M  M+KSLS+LHGM K A+LNIK + E+LM+QKGKNPK R QDQGKG + V  K SKVD                  E ECYHCK+I HW+R  P+YLEE
Subjt:  MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDA---------------HAEGECYHCKEIEHWKRKCPIYLEE

Query:  LKKNKGCVPST
        LK NKG VP T
Subjt:  LKKNKGCVPST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGGGATGGAAAAGAGTTTGAGTGAGCTGCATGGGATGCTAAAGAATGCTGAGTTGAACATCAAGTTCAGTCCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
CAAGAAAAGGGAACAAGATCAAGGAAAGGGTAGGGACACAGTTGCTGACAAGGCATCAAAAGTTGATGCTCATGCTGAAGGAGAGTGTTATCATTGCAAGGAAATTGAGC
ATTGGAAGAGGAAATGTCCTATTTATCTAGAAGAACTGAAGAAGAACAAGGGATGTGTCCCTTCGACTTTAGATATGGTTATGTTTACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGGGATGGAAAAGAGTTTGAGTGAGCTGCATGGGATGCTAAAGAATGCTGAGTTGAACATCAAGTTCAGTCCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
CAAGAAAAGGGAACAAGATCAAGGAAAGGGTAGGGACACAGTTGCTGACAAGGCATCAAAAGTTGATGCTCATGCTGAAGGAGAGTGTTATCATTGCAAGGAAATTGAGC
ATTGGAAGAGGAAATGTCCTATTTATCTAGAAGAACTGAAGAAGAACAAGGGATGTGTCCCTTCGACTTTAGATATGGTTATGTTTACTTAA
Protein sequenceShow/hide protein sequence
MNGMEKSLSELHGMLKNAELNIKFSPEVLMVQKGKNPKKREQDQGKGRDTVADKASKVDAHAEGECYHCKEIEHWKRKCPIYLEELKKNKGCVPSTLDMVMFT