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PI0000995 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0000995
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGlycine-rich RNA-binding protein
Genome locationchr03:7271009..7272112
RNA-Seq ExpressionPI0000995
SyntenyPI0000995
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3956006.1 hypothetical protein CMV_018835 [Castanea mollissima]3.0e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF +FGK+++A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

KAF4350755.1 hypothetical protein F8388_018978 [Cannabis sativa]3.0e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF ++GK+V+A+VVVD+FSGRS GFGF+TF +++AMD AI  MN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

VVA12744.1 Hypothetical predicted protein [Prunus dulcis]1.0e-2259Show/hide
Query:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        S R+CL LFR +    E  C      F+GGL+W TSDR LKDAF +FGK+V+A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  +LD RTITV KA
Subjt:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

XP_030503682.1 glycine-rich RNA-binding protein RZ1A [Cannabis sativa]3.0e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF ++GK+V+A+VVVD+FSGRS GFGF+TF +++AMD AI  MN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

XP_030955192.1 glycine-rich RNA-binding protein RZ1A [Quercus lobata]3.0e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF +FGK+++A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

TrEMBL top hitse value%identityAlignment
A0A5E4EAF7 Uncharacterized protein5.0e-2359Show/hide
Query:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        S R+CL LFR +    E  C      F+GGL+W TSDR LKDAF +FGK+V+A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  +LD RTITV KA
Subjt:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

A0A7J6H5D5 RRM domain-containing protein1.5e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF ++GK+V+A+VVVD+FSGRS GFGF+TF +++AMD AI  MN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

A0A7N2L2P6 Uncharacterized protein1.5e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF +FGK+++A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

A0A803Q044 Uncharacterized protein1.5e-2267.5Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        E E+  F+GGLSW TSDRGLKDAF ++GK+V+A+VVVD+FSGRS GFGF+TF +++AMD AI  MN  ELD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

M5VZ12 Uncharacterized protein8.6e-2359Show/hide
Query:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        S R+CL LFR +    E  C      F+GGL+W TSDR LKDAF +FGK+V+A+VVVD+FSGRS GFGF+TF +++AM+ AI EMN  +LD RTITV KA
Subjt:  SPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

SwissProt top hitse value%identityAlignment
Q03250 Glycine-rich RNA-binding protein 73.6e-1850Show/hide
Query:  EHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E+  FVGGL+W T DR L+ AF ++G ++D++++ D+ +GRS GFGF+TF + +AM +AI  MN Q+LD R+ITV +A S
Subjt:  EHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

Q03251 Glycine-rich RNA-binding protein 81.6e-1851.22Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T+D  L+  F +FG ++D++++ D+ SGRS GFGF+TF + +AM +AI EMN +ELD R ITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

Q03878 Glycine-rich RNA-binding protein4.7e-1851.22Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T+D  L+ AF +FG I D++++ D+ +GRS GFGF+TF + ++M +AI  MN QELD R ITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

Q05966 Glycine-rich RNA-binding protein 103.6e-1850Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T D  L+  F +FG+++D++++ D+ +GRS GFGF+TF + ++M +AI EMN +ELD RTITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

Q9LIN3 Glycine-rich RNA-binding protein RZ1A4.8e-2361.25Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        + E+  F+GGL+W TSDRGL+DAF ++G +V+A+VV+D+FSGRS GFGFITF  ++AMD AI  MN  +LD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

Arabidopsis top hitse value%identityAlignment
AT2G21660.1 cold, circadian rhythm, and rna binding 22.6e-1950Show/hide
Query:  EHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E+  FVGGL+W T DR L+ AF ++G ++D++++ D+ +GRS GFGF+TF + +AM +AI  MN Q+LD R+ITV +A S
Subjt:  EHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.4e-2461.25Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA
        + E+  F+GGL+W TSDRGL+DAF ++G +V+A+VV+D+FSGRS GFGFITF  ++AMD AI  MN  +LD RTITV KA
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKA

AT4G39260.1 cold, circadian rhythm, and RNA binding 11.1e-1951.22Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T+D  L+  F +FG ++D++++ D+ SGRS GFGF+TF + +AM +AI EMN +ELD R ITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

AT4G39260.2 cold, circadian rhythm, and RNA binding 11.1e-1951.22Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T+D  L+  F +FG ++D++++ D+ SGRS GFGF+TF + +AM +AI EMN +ELD R ITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS

AT4G39260.3 cold, circadian rhythm, and RNA binding 11.1e-1951.22Show/hide
Query:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS
        E E+  FVGGL+W T+D  L+  F +FG ++D++++ D+ SGRS GFGF+TF + +AM +AI EMN +ELD R ITV +A S
Subjt:  EEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGKANS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTCCATGGCATTTCCCTTTTGTTATCCTCACCTAGAAAATGCTTGCATTTGTTCCGTCTTCTGCAAGCAAGACAAGAAATAGATTGCGAAGAAGAGCATGGAAT
ATTCGTCGGAGGCTTATCGTGGTGCACCAGTGACCGAGGACTCAAAGACGCCTTCAGACGTTTTGGAAAAATTGTCGATGCTCGAGTCGTTGTAGATCAGTTTTCCGGTC
GCTCTTGTGGATTTGGATTTATTACCTTTGCAAATCGTCGAGCAATGGATAACGCAATCAGGGAAATGAATGACCAGGAACTTGACCAGCGTACTATCACAGTGGGAAAG
GCTAATTCCAGTATAGAGGTAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTCCATGGCATTTCCCTTTTGTTATCCTCACCTAGAAAATGCTTGCATTTGTTCCGTCTTCTGCAAGCAAGACAAGAAATAGATTGCGAAGAAGAGCATGGAAT
ATTCGTCGGAGGCTTATCGTGGTGCACCAGTGACCGAGGACTCAAAGACGCCTTCAGACGTTTTGGAAAAATTGTCGATGCTCGAGTCGTTGTAGATCAGTTTTCCGGTC
GCTCTTGTGGATTTGGATTTATTACCTTTGCAAATCGTCGAGCAATGGATAACGCAATCAGGGAAATGAATGACCAGGAACTTGACCAGCGTACTATCACAGTGGGAAAG
GCTAATTCCAGTATAGAGGTAGAATAA
Protein sequenceShow/hide protein sequence
MHFHGISLLLSSPRKCLHLFRLLQARQEIDCEEEHGIFVGGLSWCTSDRGLKDAFRRFGKIVDARVVVDQFSGRSCGFGFITFANRRAMDNAIREMNDQELDQRTITVGK
ANSSIEVE