; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0001061 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001061
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:17889795..17890352
RNA-Seq ExpressionPI0001061
SyntenyPI0001061
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-5376.6Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRN VD AA GALADKTP EARELI RMAENSQNFGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PN KCP ++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +R+YD H NTYN  WRDN NLRW NDNQ+ +QA  +S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-5578.01Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRNTVD  AGGALADK PTEARELIS+MAENSQ+F NR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPN KCP+++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +RKYD H NTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-5376.43Show/hide
Query:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI
        RNTVD A GGALADKTPTEARELISRMAENSQ+FGNR+S+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPN KCP+++E+ NV+
Subjt:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI

Query:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        R+YD H NT N+ WRDN N RW NDNQ+ +Q   +S+NQG
Subjt:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-5478.01Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRNT+D  AGGALADKTPTEARELISRM ENSQ+FGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPN KC  ++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +R+YD HSNTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-5579.29Show/hide
Query:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI
        RNT+D AAGGALADKTPTEARELISRMAENS++FGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPN KCP ++E+ N++
Subjt:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI

Query:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        R+YD HSNTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein4.5e-5376.6Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRN VD AA GALADKTP EARELI RMAENSQNFGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVG+PN KCP ++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +R+YD H NTYN  WRDN NLRW NDNQ+ +QA  +S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

A0A5A7ULU1 Retrotransposon gag protein2.6e-5376.43Show/hide
Query:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI
        RNTVD A GGALADKTPTEARELISRMAENSQ+FGNR+S+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPN KCP+++E+ NV+
Subjt:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI

Query:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        R+YD H NT N+ WRDN N RW NDNQ+ +Q   +S+NQG
Subjt:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

A0A5A7V0Q7 Retrotransposon gag protein6.3e-5578.01Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRNT+D  AGGALADKTPTEARELISRM ENSQ+FGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPN KC  ++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +R+YD HSNTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

A0A5D3CB46 Retrotransposon gag protein1.3e-5579.29Show/hide
Query:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI
        RNT+D AAGGALADKTPTEARELISRMAENS++FGNR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHPN KCP ++E+ N++
Subjt:  RNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVI

Query:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        R+YD HSNTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  RKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

A0A5D3CRR8 Retrotransposon gag protein2.2e-5578.01Show/hide
Query:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV
        DRNTVD  AGGALADK PTEARELIS+MAENSQ+F NR+SELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHPN KCP+++E+ N+
Subjt:  DRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANV

Query:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG
        +RKYD H NTYN+ WRDN NLRW NDNQ+ +QA S+S+NQG
Subjt:  IRKYDAHSNTYNASWRDNTNLRWINDNQRPSQATSSSNNQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGACACTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCCAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGG
CAACAGATCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTTGCAAAATGTGGGGTATGCGGTCTAGTCGGACATCCTAATGGCAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTTATTAGGAAGTACGATGCTCATAGCAAC
ACTTACAACGCCAGTTGGAGAGACAACACTAATCTGAGATGGATAAATGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTAAAGGCAAACTTTC
GGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGACACTGCAGCAGGTGGTGCTTTGGCTGACAAAACCCCTACTGAAGCCAGAGAGCTCATTTCAAGGATGGCTGAAAATTCACAGAATTTTGG
CAACAGATCATCCGAGCTCGATAATTCATTGACTAAGGAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTG
TTAAAGTTGCAAAATGTGGGGTATGCGGTCTAGTCGGACATCCTAATGGCAAGTGCCCTGACTTAGTGGAAGAGGCAAATGTTATTAGGAAGTACGATGCTCATAGCAAC
ACTTACAACGCCAGTTGGAGAGACAACACTAATCTGAGATGGATAAATGACAACCAAAGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTAAAGGCAAACTTTC
GGCTTAG
Protein sequenceShow/hide protein sequence
MDRNTVDTAAGGALADKTPTEARELISRMAENSQNFGNRSSELDNSLTKEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNGKCPDLVEEANVIRKYDAHSN
TYNASWRDNTNLRWINDNQRPSQATSSSNNQGKGKLSA