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PI0001077 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001077
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:20360521..20360817
RNA-Seq ExpressionPI0001077
SyntenyPI0001077
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7035579.1 unnamed protein product [Microthlaspi erraticum]1.3e-3165.31Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRTIME+VRC+L E+ L + FWAEA ATA Y++NRSPC+ ID   PE+LW  +KP  ++LR FG V YVH  QGKL PRALKG+FLGYP GTKGYK+
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
KAA0056038.1 hypothetical protein E6C27_scaffold319G001970 [Cucumis melo var. makuwa]6.0e-3263.27Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRT+MERVRC++S+A +S++FWAEA+ATATY +NRSPC  ID++TPEE W+   P +SNL+ F C  YV+ KQ K++PR LK MF+GYPDG KGYKL
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
KAA0062924.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]4.6e-3264.29Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRT+MERVRC++SEA +S++FWAEA+ATATY +NRSPC  ID++TPEE W+   P + NL+ FGC  YV+ KQ K++PRALK MF+GYPD  KGYKL
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
TYK02789.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-3267.71Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGY
        MNRT+MERVRC+LSEA L +DFWAEA+ATATY INRSP   I+++ PEE+W    PD+SNL+ FGC  YVHTKQ K++PRALK MF+GYP G KGY
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGY
XP_024038695.1 LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 1-like [Citrus clementina]4.1e-3366.33Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRTI+ERVRC+L  ANLSK FWAE V T  Y+INRSP + +  +TP+ELWS K PD+SNLR+FGC  Y H KQGKL+PRA+KG FLGYP+G KG+K+
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
TrEMBL top hitse value%identityAlignment
A0A5A7ULT2 Integrase catalytic domain-containing protein2.9e-3263.27Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRT+MERVRC++S+A +S++FWAEA+ATATY +NRSPC  ID++TPEE W+   P +SNL+ F C  YV+ KQ K++PR LK MF+GYPDG KGYKL
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
A0A5D3BXB7 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-3367.71Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGY
        MNRT+MERVRC+LSEA L +DFWAEA+ATATY INRSP   I+++ PEE+W    PD+SNL+ FGC  YVHTKQ K++PRALK MF+GYP G KGY
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGY
A0A5D3D1S7 Retrotransposon protein, putative, Ty1-copia subclass2.2e-3264.29Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRT+MERVRC++SEA +S++FWAEA+ATATY +NRSPC  ID++TPEE W+   P + NL+ FGC  YV+ KQ K++PRALK MF+GYPD  KGYKL
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
A0A6D2J0E6 Uncharacterized protein6.4e-3265.31Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRTIME+VRC+L E+ L + FWAEA ATA Y++NRSPC+ ID   PE+LW  +KP  ++LR FG V YVH  QGKL PRALKG+FLGYP GTKGYK+
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
A0A6D2JDY9 Uncharacterized protein6.4e-3265.31Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
        MNRTIME+VRC+L E+ L + FWAEA ATA Y++NRSPC+ ID   PE+LW  +KP  ++LR FG V YVH  QGKL PRALKG+FLGYP GTKGYK+
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL
SwissProt top hitse value%identityAlignment
P04146 Copia protein1.9e-2051.52Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPI--DLRTPEELWSCKKPDISNLRVFGCVVYVH--TKQGKLDPRALKGMFLGY-PDGTK
        M RTI E+ R ++S A L K FW EAV TATY+INR P   +    +TP E+W  KKP + +LRVFG  VYVH   KQGK D ++ K +F+GY P+G K
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPI--DLRTPEELWSCKKPDISNLRVFGCVVYVH--TKQGKLDPRALKGMFLGY-PDGTK
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-2146.53Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHT---KQGKLDPRALKGMFLGYPDGTKGYK
        MNRTI+E+VR +L  A L K FW EAV TA Y+INRSP  P+    PE +W+ K+   S+L+VFGC  + H    ++ KLD +++  +F+GY D   GY+
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHT---KQGKLDPRALKGMFLGYPDGTKGYK

Query:  L
        L
Subjt:  L
P92512 Uncharacterized mitochondrial protein AtMg007101.3e-1852.38Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKG
        MNRTI+E+VR +L E  L K F A+A  TA +IIN+ P T I+   P+E+W    P  S LR FGCV Y+H  +GKL PRA KG
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKG
Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-2052.38Show/hide
Query:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKG
        MNRTI+E+VR +L E  L K F A+A  TA +IIN+ P T I+   P+E+W    P  S LR FGCV Y+H  +GKL PRA KG
Subjt:  MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGAACAATAATGGAAAGAGTAAGATGTATCTTGTCTGAAGCTAACTTGTCTAAAGACTTTTGGGCAGAAGCTGTAGCTACTGCAACATACATAATTAACAGAAG
TCCCTGCACTCCTATTGACTTAAGGACTCCTGAAGAATTATGGAGCTGTAAAAAACCAGATATATCTAACTTGAGAGTGTTTGGTTGTGTGGTCTATGTACACACCAAAC
AAGGGAAGTTAGATCCAAGGGCTTTGAAAGGCATGTTCTTAGGCTATCCAGATGGTACTAAGGGATATAAACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGAACAATAATGGAAAGAGTAAGATGTATCTTGTCTGAAGCTAACTTGTCTAAAGACTTTTGGGCAGAAGCTGTAGCTACTGCAACATACATAATTAACAGAAG
TCCCTGCACTCCTATTGACTTAAGGACTCCTGAAGAATTATGGAGCTGTAAAAAACCAGATATATCTAACTTGAGAGTGTTTGGTTGTGTGGTCTATGTACACACCAAAC
AAGGGAAGTTAGATCCAAGGGCTTTGAAAGGCATGTTCTTAGGCTATCCAGATGGTACTAAGGGATATAAACTGTGA
Protein sequenceShow/hide protein sequence
MNRTIMERVRCILSEANLSKDFWAEAVATATYIINRSPCTPIDLRTPEELWSCKKPDISNLRVFGCVVYVHTKQGKLDPRALKGMFLGYPDGTKGYKL