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PI0001094 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001094
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description60S ribosomal protein L39
Genome locationchr02:478559..480049
RNA-Seq ExpressionPI0001094
SyntenyPI0001094
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-2181.54Show/hide
Query:  PRFVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P    L    R+ ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PRFVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-2185.71Show/hide
Query:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        FV L   +R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KCW86494.1 hypothetical protein EUGRSUZ_B03153 [Eucalyptus grandis]3.9e-2086.21Show/hide
Query:  ISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + + S ++PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  ISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PON37200.1 Ribosomal protein [Trema orientale]3.9e-2092.73Show/hide
Query:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]1.6e-2185.71Show/hide
Query:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        FV L   +R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hitse value%identityAlignment
A0A059D7Q1 Uncharacterized protein1.9e-2086.21Show/hide
Query:  ISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + + S ++PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  ISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5AKY6 Ribosomal protein1.9e-2092.73Show/hide
Query:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein1.9e-2092.73Show/hide
Query:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6A2Z9D6 60S ribosomal protein L39-11.9e-2069.23Show/hide
Query:  RPLLHFALSVYRVPRFVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + L H  + V+  PR   +   T +  +PSHKTF IKKKLAKKMRQNRPIP+WIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RPLLHFALSVYRVPRFVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC1114629687.6e-2285.71Show/hide
Query:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        FV L   +R  ++PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-13.7e-2192.16Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L397.4e-2294.12Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-27.4e-2294.12Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-32.1e-2192.16Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-17.4e-2294.12Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein1.0e-1897.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein8.4e-2188.24Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein2.6e-2292.16Show/hide
Query:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACTCCAAAAACCCTAATCTGTTGTTCTTTCCCTGAGCTAACAGAACGGCCACTTCTTCACTTTGCTCTCTCAGTTTATAGGGTTCCTCGATTTGTTAACCTTAC
AATTTCGACGCGTTCTCGTAGACTTCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGTTTGA
GGACTGACAACACCATCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTTGGATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATACTCCAAAAACCCTAATCTGTTGTTCTTTCCCTGAGCTAACAGAACGGCCACTTCTTCACTTTGCTCTCTCAGTTTATAGGGTTCCTCGATTTGTTAACCTTAC
AATTTCGACGCGTTCTCGTAGACTTCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGTTTGA
GGACTGACAACACCATCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTTGGATTTTAA
Protein sequenceShow/hide protein sequence
MNTPKTLICCSFPELTERPLLHFALSVYRVPRFVNLTISTRSRRLPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF