CuGenDBv2

Gene ID	PI0001100
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr01:14638202..14638774
RNA-Seq Expression	PI0001100
Synteny	PI0001100
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

3.4e-68

69.57

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++R+ VLPWGI DHSPILFYP  +   R++SFRFFNHWVE+ SF +VV+ +W R  GVS LVSLM NLH LKP+LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ+EVERNP S   SR A +A   FW A+R EEASLRQKS+VRWL LGDQN+AFFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

6.5e-67

68.48

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SFRFFNHWVED SF +VV+ +W R  GVSPLVSLM NLH LKP LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ++VERN  S   SR A +A   FW A+R EEASLRQKSR+RWL+LGDQN+ FFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

2.6e-63

63.3

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SF FFNHWVED SF +VV+ +W R  GVSP+VSLM NLH LKP++RR FGRHI+SLSEEV +AK A+
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS
        D AQ+EVERNP S   S  AG++   FW A+R EEASLRQKSR+RWL+LGDQN+AFFHRS+RSR+ RN L S+VDS+G R   ++  S
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS

TYK26658.1 uncharacterized protein E5676_scaffold313G003080 [Cucumis melo var. makuwa]

8.8e-64

63.83

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Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SF FFNHWVED SF +VV+ +W R  GVSP+VSLM NLH LKP++RR FGRHI+SLSEEV +AK AM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS
        D AQ+EVERNP S   S  AG++   FW A+R EEASLRQKSR+RWL+LGDQN+AFFHRS+RSR+ RN L S+VDS+G R   ++  S
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

6.5e-67

68.48

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SFRFFNHWVED SF +VV+ +W R  GVSPLVSLM NLH LKP LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ++VERN  S   SR A +A   FW A+R EEASLRQKSR+RWL+LGDQN+ FFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

3.1e-67

68.48

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SFRFFNHWVED SF +VV+ +W R  GVSPLVSLM NLH LKP LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ++VERN  S   SR A +A   FW A+R EEASLRQKSR+RWL+LGDQN+ FFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

A0A5A7TZS0 Reverse transcriptase domain-containing protein

1.7e-68

69.57

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++R+ VLPWGI DHSPILFYP  +   R++SFRFFNHWVE+ SF +VV+ +W R  GVS LVSLM NLH LKP+LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ+EVERNP S   SR A +A   FW A+R EEASLRQKS+VRWL LGDQN+AFFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

A0A5A7V275 Reverse transcriptase

3.1e-67

68.48

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SFRFFNHWVED SF +VV+ +W R  GVSPLVSLM NLH LKP LRR FGRHI+SLSEEVH AKEAM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH
        D AQ++VERN  S   SR A +A   FW A+R EEASLRQKSR+RWL+LGDQN+ FFHRS+RSR+ RN+LLS+VDS+G RV+SH
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSH

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

1.2e-63

63.3

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SF FFNHWVED SF +VV+ +W R  GVSP+VSLM NLH LKP++RR FGRHI+SLSEEV +AK A+
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS
        D AQ+EVERNP S   S  AG++   FW A+R EEASLRQKSR+RWL+LGDQN+AFFHRS+RSR+ RN L S+VDS+G R   ++  S
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS

A0A5D3DT20 Reverse transcriptase domain-containing protein

4.2e-64

63.83

Show/hide

Query:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM
        AWP++ V VLPWGI DHSPILFYP  +   +++SF FFNHWVED SF +VV+ +W R  GVSP+VSLM NLH LKP++RR FGRHI+SLSEEV +AK AM
Subjt:  AWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAM

Query:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS
        D AQ+EVERNP S   S  AG++   FW A+R EEASLRQKSR+RWL+LGDQN+AFFHRS+RSR+ RN L S+VDS+G R   ++  S
Subjt:  DWAQQEVERNPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

1.6e-07

25.29

Show/hide

Query:  GIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGV-SPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAMDWAQQEVERNP
        G+ DHSP +       +R    FR+F+      +F   ++  W  ++ V S + SL  +L   K   +    +   ++  +   A ++++  Q ++  NP
Subjt:  GIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGV-SPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAMDWAQQEVERNP

Query:  GSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRV
         S    R   VA   +       E+  RQKSR++WL+ GD N+ FFH+ I +   +N +  +   + +RV
Subjt:  GSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRV

Sequences

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CDS sequence

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ATGGCTTGGCCTAGTCTGCGTGTTACTGTTTTGCCTTGGGGAATTTATGACCATTCCCCTATTTTATTCTATCCTGGTGTTGAGCAGCAGAGGCGTATTATTTCGTTTCG
TTTCTTTAATCATTGGGTGGAGGATACGTCTTTCAGTGATGTGGTGTCTTCGATTTGGGTGAGAAGGTTGGGTGTGTCTCCGTTAGTGAGTCTTATGTGGAATTTGCATG
ACCTTAAACCTGTGCTTCGTAGACATTTTGGTAGACATATCAGGAGCCTTAGTGAGGAGGTGCACTCGGCTAAAGAGGCTATGGATTGGGCCCAGCAAGAGGTTGAGCGG
AATCCTGGGTCTATGGAGAGGAGTCGTGATGCTGGTGTTGCGGCTAATGCCTTTTGGTTAGCTATCCGTCAGGAAGAAGCCTCTCTTCGTCAGAAATCACGGGTTAGGTG
GTTGGAGCTTGGGGATCAGAATTCTGCCTTTTTTCATCGCTCGATTCGTTCCCGTATTGGTCGTAATAATTTGCTTTCTATTGTTGATTCTGAGGGTATTCGGGTGACGT
CCCATAAGAGGTACAGCAGGTAG

mRNA sequence

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Protein sequence

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MAWPSLRVTVLPWGIYDHSPILFYPGVEQQRRIISFRFFNHWVEDTSFSDVVSSIWVRRLGVSPLVSLMWNLHDLKPVLRRHFGRHIRSLSEEVHSAKEAMDWAQQEVER
NPGSMERSRDAGVAANAFWLAIRQEEASLRQKSRVRWLELGDQNSAFFHRSIRSRIGRNNLLSIVDSEGIRVTSHKRYSR

PI0001100 (gene) of Melon (PI 482460) v1 genome