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PI0001107 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001107
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like protein
Genome locationchr08:19554520..19555976
RNA-Seq ExpressionPI0001107
SyntenyPI0001107
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB55919.1 hypothetical protein L484_008270 [Morus notabilis]7.8e-0648Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        ++ HE + VE RHLKS+R  ++CSK           H   A +  +  T KAE   DFRPT+PGHSPGVGH INN
Subjt:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

KAE8647497.1 hypothetical protein Csa_004238, partial [Cucumis sativus]2.2e-3291.89Show/hide
Query:  IHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        + +E VYVECRHLKSSRSCKKCSK IGT PPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
Subjt:  IHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

KAF3961816.1 hypothetical protein CMV_013603 [Castanea mollissima]7.8e-0646.05Show/hide
Query:  IIHHERVYVECRHLKSSRS-CKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        ++HH  + VE RHLKS ++ C KCS  + T        L +    Q   T K E   DFRPT PGHSPGVGH IN+
Subjt:  IIHHERVYVECRHLKSSRS-CKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

KAG6595044.1 hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia]5.2e-1865Show/hide
Query:  IHHERVYVECRHLKSSRSCKKCSKLIGTP------PPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        + HE VYVECRHLKSSR CKKC+K I  P          P  +  AGN Q+F T KAE PQDFRPTSPGHSPGVGHHINN
Subjt:  IHHERVYVECRHLKSSRSCKKCSKLIGTP------PPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

PNT27018.1 hypothetical protein POPTR_007G041400 [Populus trichocarpa]3.5e-0649.35Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        I+ HE V+VE R LKS   CKKCS         P    H  +AG  Q   T K +   DFRPT PGHSPGVGH +NN
Subjt:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

TrEMBL top hitse value%identityAlignment
A0A0A0KGB6 Uncharacterized protein3.3e-3490.91Show/hide
Query:  VGIIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        VG++ +E VYVECRHLKSSRSCKKCSK IGT PPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
Subjt:  VGIIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

A0A0S3R503 Uncharacterized protein8.4e-0641.46Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQ-------DFRPTSPGHSPGVGHHINN
        I+HH+ V+VE RHL+S   C++CSK         P +   +G+ +    +  E  +       DFRPT+PGHSPGVGH INN
Subjt:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQ-------DFRPTSPGHSPGVGHHINN

A0A2K1ZP13 Uncharacterized protein1.7e-0649.35Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        I+ HE V+VE R LKS   CKKCS         P    H  +AG  Q   T K +   DFRPT PGHSPGVGH +NN
Subjt:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPP--PPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

A0A4P1RI20 Uncharacterized protein5.0e-0643.9Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCS----KLIGTPPPPPPAHLKSAGN---PQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        I+  + +YV+ RHL+S R C+KCS    KLIG        H  +A +    Q+    +     DFRPT+PGHSPGVGH INN
Subjt:  IIHHERVYVECRHLKSSRSCKKCS----KLIGTPPPPPPAHLKSAGN---PQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

W9R6N3 Uncharacterized protein3.8e-0648Show/hide
Query:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        ++ HE + VE RHLKS+R  ++CSK           H   A +  +  T KAE   DFRPT+PGHSPGVGH INN
Subjt:  IIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

SwissProt top hitse value%identityAlignment
Q058G9 Precursor of CEP52.6e-0444.68Show/hide
Query:  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        +PPPPPP   +S G             +DFRPT+PGHSPG+GH +++
Subjt:  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN

Arabidopsis top hitse value%identityAlignment
AT5G66815.1 unknown protein1.9e-0544.68Show/hide
Query:  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
        +PPPPPP   +S G             +DFRPT+PGHSPG+GH +++
Subjt:  TPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGGGTAGGCATCATTCACCACGAGAGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATTAATCGGTACTCCGCCACC
GCCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCTCAACAATTTACCACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCGCCTGGCCATAGTCCTGGTG
TTGGCCACCATATCAACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATGGGTAGGCATCATTCACCACGAGAGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATTAATCGGTACTCCGCCACC
GCCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCTCAACAATTTACCACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCGCCTGGCCATAGTCCTGGTG
TTGGCCACCATATCAACAATTGA
Protein sequenceShow/hide protein sequence
MKWVGIIHHERVYVECRHLKSSRSCKKCSKLIGTPPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN