CuGenDBv2

Gene ID	PI0001139
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Cytochrome b6-F complex subunit 5
Genome location	tig00003626:1034426..1034831
RNA-Seq Expression	PI0001139
Synteny	PI0001139
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0015979 - photosynthesis (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0022900 - electron transport chain (biological process) GO:0005634 - nucleus (cellular component) GO:0009512 - cytochrome b6f complex (cellular component) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function) GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function) GO:0045158 - electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR003683 - Cytochrome b6/f complex, subunit 5 IPR007802 - Cytochrome b6-f complex subunit 6 IPR036099 - Cytochrome b6/f complex, subunit 5 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA3441743.1 cytochrome b6-F complex subunit 5 [Gossypium australe]

1.8e-12

66.25

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Query:  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

KAF1855872.1 hypothetical protein Lal_00028291 [Lupinus albus]

1.0e-12

59.14

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Query:  MPTITSYFGFLLAVLTITSALFI------------------------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        MPTITSYFGFLLA LTITSALFI                                    VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI------------------------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

KAF1876954.1 hypothetical protein Lal_00033879 [Lupinus albus]

6.8e-12

68.92

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Query:  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL
        MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI +TLAGLFVTAYLQYRRGDQL
Subjt:  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL

MQL82473.1 hypothetical protein [Colocasia esculenta]

6.8e-12

78.69

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Query:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL
        MPTITSYFGFLLA  TIT AL I      V LFGI+LGLIP+TLAGLFVTAYLQYRRGDQL
Subjt:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL

RWR97765.1 cytochrome b6-F complex subunit 5 [Cinnamomum micranthum f. kanehirae]

2.8e-13

80.95

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Query:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT11 Uncharacterized protein

9.0e-18

96.49

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Query:  MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        M TITSYFGFLLAVLTITSALFIVFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

A0A3S3NMV2 Cytochrome b6-F complex subunit 5

1.3e-13

80.95

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Query:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        M TITSYFGFLLA  TIT AL I      VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

A0A5B6TKA9 Cytochrome b6-f complex subunit 6

8.7e-13

66.25

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Query:  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        M TITSYFGFLLA LTIT ALFI                       VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI-----------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

A0A6A5LB28 Cytochrome b6-f complex subunit 6

5.1e-13

59.14

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Query:  MPTITSYFGFLLAVLTITSALFI------------------------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        MPTITSYFGFLLA LTITSALFI                                    VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  MPTITSYFGFLLAVLTITSALFI------------------------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

A0A6A5MQ83 Cytochrome b6-f complex subunit 6

3.3e-12

68.92

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Query:  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL
        MPTITSYFGFLLA LTI SALFI                   VFLFGIVLGLI +TLAGLFVTAYLQYRRGDQL
Subjt:  MPTITSYFGFLLAVLTITSALFI-------------------VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQL

SwissProt top hits

e value

%identity

Alignment

A1EA27 Cytochrome b6-f complex subunit 5

3.0e-10

97.06

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

P69453 Cytochrome b6-f complex subunit 5

3.0e-10

97.06

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

Q3V516 Cytochrome b6-f complex subunit 5

3.0e-10

97.06

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

Q5QA79 Cytochrome b6-f complex subunit 5

3.0e-10

97.06

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

Q7FNS7 Cytochrome b6-f complex subunit 5

3.0e-10

97.06

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLDL
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00600.1 PETG

6.1e-11

96.97

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Query:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLD
        VFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQLD
Subjt:  VFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLD

Sequences

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CDS sequence

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ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATGAC
TTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

mRNA sequence

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ATGCCTACTATCACTAGTTATTTCGGTTTTCTACTAGCAGTTTTAACTATAACCTCAGCTCTATTTATCGTTTTTCTATTTGGAATCGTATTAGGTCTAATTCCTATGAC
TTTGGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTGA

Protein sequence

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MPTITSYFGFLLAVLTITSALFIVFLFGIVLGLIPMTLAGLFVTAYLQYRRGDQLDL

PI0001139 (gene) of Melon (PI 482460) v1 genome