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PI0001153 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001153
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:23280668..23281301
RNA-Seq ExpressionPI0001153
SyntenyPI0001153
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-6066.49Show/hide
Query:  KSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRG
        +SHPAAK LL+KS PYYDDLSYVF  + ATGA S+TFAD GSNVSN FNDG+ LGDSH                DE+   RAG++SE RN SSGSKRKRG
Subjt:  KSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRG

Query:  GQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
         +HYE VEVI +  EF NDQLK I +WPKEKRA EVELR EV+KQL+DI +LRS+DR KLM+I+FRSV+ IEGFLSIP +LKLEYCN+LLE NV
Subjt:  GQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.3e-5867.38Show/hide
Query:  AAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRGGQHY
        A K LL+KS PYYDDL YVF K+RAT ARS+TFADVGSNV N FN  + L DSH                DEM   RAG++SE +NCSSGSKRK+G +HY
Subjt:  AAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRGGQHY

Query:  ETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE
        ETVEVIK+ +EF NDQLK IANWPKEKRA EVELRAEVMKQL+DI EL+SRDR KL++I+FRSV+ IEGFLSIP E KLEYCN+LL+
Subjt:  ETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-6164.8Show/hide
Query:  FDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGS
        F  W++SHP  K LLNKS PYYDD+SYVF K++AT ARS+TFADVGSN+ N FNDG+ LGDSH                DEM  TRAG++SE RNCSS S
Subjt:  FDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGS

Query:  KRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE
        KRK+G QHYETVEVI++ M+F NDQLK IA+W KEKRA++VELRA V+KQL+DI +L++RDR K+++I+F SV+ IEGFLSIP ELKLEYCNVLLE
Subjt:  KRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-5263.04Show/hide
Query:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSHDEMLRTRAGRSSEGRNCSSGSKRKRGGQHYETVEVI
        +FDSWVKSHPA K LL+KS PYYDDLSYVF K+RATGARS+TF DVGSNV N FND I LGDSHDE + T     S+G + S               EVI
Subjt:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSHDEMLRTRAGRSSEGRNCSSGSKRKRGGQHYETVEVI

Query:  KNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
        ++ MEF N+QLK IA+W KEKRA+E+E+RA+V+KQL+DI ELRS+ R KLM+I+FRS++ I GFLSIP ELKLEYCN+LL+ NV
Subjt:  KNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.2e-6567.5Show/hide
Query:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG
        +FDSW+KSHPAAK LL+KS PYYDDLSYVF K+RATGARS+TF +VGSNVSN FND I LGDSH                DEM   RAG++SE RNCSS 
Subjt:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG

Query:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
        SKRKRG + YETVEVI++ MEF N+QLK IA+WPKEKRA+EVE+RA+V+KQL+DI +LRS+DR KLM+I+FRS++ IEGFLSIP ELKLEYCN+LL+  V
Subjt:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859535.7e-6667.5Show/hide
Query:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG
        +FDSW+KSHPAAK LL+KS PYYDDLSYVF K+RATGARS+TF +VGSNVSN FND I LGDSH                DEM   RAG++SE RNCSS 
Subjt:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG

Query:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
        SKRKRG + YETVEVI++ MEF N+QLK IA+WPKEKRA+EVE+RA+V+KQL+DI +LRS+DR KLM+I+FRS++ IEGFLSIP ELKLEYCN+LL+  V
Subjt:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

A0A5A7SQU2 Putative nuclease HARBI12.6e-5867.38Show/hide
Query:  AAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRGGQHY
        A K LL+KS PYYDDL YVF K+RAT ARS+TFADVGSNV N FN  + L DSH                DEM   RAG++SE +NCSSGSKRK+G +HY
Subjt:  AAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRGGQHY

Query:  ETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE
        ETVEVIK+ +EF NDQLK IANWPKEKRA EVELRAEVMKQL+DI EL+SRDR KL++I+FRSV+ IEGFLSIP E KLEYCN+LL+
Subjt:  ETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE

A0A5A7U0H7 Retrotransposon protein5.7e-6667.5Show/hide
Query:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG
        +FDSW+KSHPAAK LL+KS PYYDDLSYVF K+RATGARS+TF +VGSNVSN FND I LGDSH                DEM   RAG++SE RNCSS 
Subjt:  MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSG

Query:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
        SKRKRG + YETVEVI++ MEF N+QLK IA+WPKEKRA+EVE+RA+V+KQL+DI +LRS+DR KLM+I+FRS++ IEGFLSIP ELKLEYCN+LL+  V
Subjt:  SKRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

A0A5D3BZU3 Retrotransposon protein9.5e-6166.49Show/hide
Query:  KSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRG
        +SHPAAK LL+KS PYYDDLSYVF  + ATGA S+TFAD GSNVSN FNDG+ LGDSH                DE+   RAG++SE RN SSGSKRKRG
Subjt:  KSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGSKRKRG

Query:  GQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV
         +HYE VEVI +  EF NDQLK I +WPKEKRA EVELR EV+KQL+DI +LRS+DR KLM+I+FRSV+ IEGFLSIP +LKLEYCN+LLE NV
Subjt:  GQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV

A0A5D3CVB7 Retrotransposon protein2.5e-6164.8Show/hide
Query:  FDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGS
        F  W++SHP  K LLNKS PYYDD+SYVF K++AT ARS+TFADVGSN+ N FNDG+ LGDSH                DEM  TRAG++SE RNCSS S
Subjt:  FDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSH----------------DEMLRTRAGRSSEGRNCSSGS

Query:  KRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE
        KRK+G QHYETVEVI++ M+F NDQLK IA+W KEKRA++VELRA V+KQL+DI +L++RDR K+++I+F SV+ IEGFLSIP ELKLEYCNVLLE
Subjt:  KRKRGGQHYETVEVIKNEMEFPNDQLKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATAGTTGGGTCAAGAGTCATCCTGCAGCCAAAAGACTTCTAAACAAATCATTGCCATATTATGATGATCTGTCCTATGTCTTCGACAAAAATCGAGCAACAGG
AGCACGTTCAAAGACCTTTGCTGATGTGGGATCTAATGTGTCAAACAATTTTAATGACGGTATTTCCCTTGGTGATTCACATGATGAGATGTTAAGAACACGTGCAGGTC
GATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTGGCCAACATTATGAAACGGTAGAGGTGATCAAGAACGAAATGGAATTTCCAAATGATCAA
TTAAAGGTAATTGCAAATTGGCCAAAAGAAAAGCGTGCAATAGAGGTCGAATTGCGTGCTGAAGTCATGAAACAACTGAAAGATATCTCTGAACTACGGAGTCGAGATAG
GGTAAAGCTTATGCGAATAATTTTCCGTAGTGTGGATGACATAGAGGGATTCTTGTCGATTCCAGCAGAACTTAAATTGGAGTATTGTAATGTTCTCTTGGAAGAAAATG
TTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATAGTTGGGTCAAGAGTCATCCTGCAGCCAAAAGACTTCTAAACAAATCATTGCCATATTATGATGATCTGTCCTATGTCTTCGACAAAAATCGAGCAACAGG
AGCACGTTCAAAGACCTTTGCTGATGTGGGATCTAATGTGTCAAACAATTTTAATGACGGTATTTCCCTTGGTGATTCACATGATGAGATGTTAAGAACACGTGCAGGTC
GATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTGGCCAACATTATGAAACGGTAGAGGTGATCAAGAACGAAATGGAATTTCCAAATGATCAA
TTAAAGGTAATTGCAAATTGGCCAAAAGAAAAGCGTGCAATAGAGGTCGAATTGCGTGCTGAAGTCATGAAACAACTGAAAGATATCTCTGAACTACGGAGTCGAGATAG
GGTAAAGCTTATGCGAATAATTTTCCGTAGTGTGGATGACATAGAGGGATTCTTGTCGATTCCAGCAGAACTTAAATTGGAGTATTGTAATGTTCTCTTGGAAGAAAATG
TTTGA
Protein sequenceShow/hide protein sequence
MFDSWVKSHPAAKRLLNKSLPYYDDLSYVFDKNRATGARSKTFADVGSNVSNNFNDGISLGDSHDEMLRTRAGRSSEGRNCSSGSKRKRGGQHYETVEVIKNEMEFPNDQ
LKVIANWPKEKRAIEVELRAEVMKQLKDISELRSRDRVKLMRIIFRSVDDIEGFLSIPAELKLEYCNVLLEENV