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PI0001179 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001179
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSAM_MT_RSMB_NOP domain-containing protein
Genome locationchr04:17609194..17612254
RNA-Seq ExpressionPI0001179
SyntenyPI0001179
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607741.1 26S rRNA (cytosine-C(5))-methyltransferase NOP2B, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0570Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE K  RLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

XP_004148920.1 probable 28S rRNA (cytosine-C(5))-methyltransferase [Cucumis sativus]3.8e-0672.5Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + G+IFANE KAQRLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

XP_004148920.1 probable 28S rRNA (cytosine-C(5))-methyltransferase [Cucumis sativus]3.0e-1164.79Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKD---NDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRK+KDE FTPK  KE++D  DL DALDE+E DN + D    DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKD---NDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

XP_008463018.1 PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucumis melo]2.2e-1473.53Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK  KE+ED  DL DALDEEE DN L D+DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

XP_008463018.1 PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucumis melo]1.7e-0675Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE KAQRLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

XP_008463018.1 PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucumis melo]1.9e-1372.06Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK  KE+ED  DL DAL EEE DN L D+DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

XP_022941253.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita moschata]2.4e-0570Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE K  RLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

XP_022941253.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cucurbita moschata]4.5e-0761.97Show/hide
Query:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQ--GSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK   KE+E+  DL DALDEEE ++ + D DEQ  GSG  S+ SSDGD+PLA DF  GSD+
Subjt:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQ--GSGFDSKDSSDGDNPLAHDFLKGSDK

XP_038897895.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida]8.4e-0672.5Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE KA RLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

XP_038897895.1 probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Benincasa hispida]1.5e-0763.77Show/hide
Query:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK   KE+E+  DL DALDEEE ++ + D DEQGSG  S+ SSDGD+PLA DF  GSD+
Subjt:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

TrEMBL top hitse value%identityAlignment
A0A0A0K549 SAM_MT_RSMB_NOP domain-containing protein1.8e-0672.5Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + G+IFANE KAQRLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

A0A0A0K549 SAM_MT_RSMB_NOP domain-containing protein7.4e-0863.77Show/hide
Query:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK   KE+E+  DL DALDEEE ++ + D DEQGSG  S+ SSDGD+PLA DF  GSD+
Subjt:  KRKKKDEHFTPK-CFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

A0A1S3CJU2 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase8.2e-0775Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE KAQRLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

A0A1S3CJU2 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase9.0e-1472.06Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK  KE+ED  DL DAL EEE DN L D+DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

A0A5D3CCE3 Putative 28S rRNA (Cytosine(4447)-C(5))-methyltransferase1.1e-1473.53Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK  KE+ED  DL DALDEEE DN L D+DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

A0A5D3CCE3 Putative 28S rRNA (Cytosine(4447)-C(5))-methyltransferase8.2e-0775Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE KAQRLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

A0A5D3CCE3 Putative 28S rRNA (Cytosine(4447)-C(5))-methyltransferase1.1e-1473.53Show/hide
Query:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK
        KRKKKDE FTPK  KE+ED  DL DALDEEE DN L D+DE+GSG  S+DSSDGD+PLAHDFL+GSD+
Subjt:  KRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDK

A0A6J1FCL8 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase isoform X15.9e-0567.5Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + G+IFANE KA RLKSL ANL +M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

A0A6J1FRL9 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase1.2e-0570Show/hide
Query:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM
        + GIIFANE K  RLKSL ANLH+M +TN VVC YDGKE+
Subjt:  DKGIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEM

A0A6J1FRL9 probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase2.4e-0654.41Show/hide
Query:  LKRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSD
        LK KKKDE FT K  +E++D  ++ D +D EE +N + D DE+GS   S+ SSDGD+PLA DFL+GSD
Subjt:  LKRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSD

SwissProt top hitse value%identityAlignment
O94268 25S rRNA (cytosine-C(5))-methyltransferase nop22.1e-0445.24Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDEL
        GIIFAN++   R K+L AN+H++ + N +VC YDG++  +E+
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDEL

P40991 25S rRNA (cytosine(2870)-C(5))-methyltransferase1.6e-0451.35Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKE
        G +FAN+    R KSLIAN+H++  TN +VC YD +E
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKE

P46087 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase2.8e-0445.95Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKE
        G+I AN+  A+RLKS++ NLH++ +TN ++  YDG++
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKE

Q8VYM6 26S rRNA (cytosine-C(5))-methyltransferase NOP2B5.5e-0861.36Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ
        GII+ANE K  RLKSL ANLH+M +TN +VC YDG+E+   L Q
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ

Q9FG73 25S rRNA (cytosine-C(5))-methyltransferase NOP2A1.2e-0759.09Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ
        G+I+ANE K  RLKSL ANLH+M +TN +VC YDG+E+   L Q
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ

Arabidopsis top hitse value%identityAlignment
AT4G26600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein3.9e-0961.36Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ
        GII+ANE K  RLKSL ANLH+M +TN +VC YDG+E+   L Q
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ

AT5G55920.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein8.6e-0959.09Show/hide
Query:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ
        G+I+ANE K  RLKSL ANLH+M +TN +VC YDG+E+   L Q
Subjt:  GIIFANETKAQRLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTATCTCATCCACAGCGTCGACCGCTATCCATTCCGCACCACGAGAGCCCCACGGTCGTTCAGATCGGACCAACCCACCGTCGCACGCCACCCATCGTCGTTCAGA
TCTTCAACGCGACACCACACCATATCACCGCACATTCAGATCTACAACACTCTGCCGCACCATGTCGCTGCACCACACCGCCACACGTTCAGATCTGCAACGCGACACCA
TCCATGCTGTCGCACGCCACTATCGTTGTTTAGATCTGTCACACGAATGCCACCTACACTGCCGCAACACCGTCCGTCCAAATGTGAGCCTGTCGTTCAGATCTGTCTGC
CCGCAACCCCACCGTCGTTTAGATCCGATCAACGCTAAAAGGGCATTGCTCGTGGAGTTGGCCTCAATTAGAGATCTTTCTAATGCTCTATTGAAAAGGAAGAAGAAGGA
CGAACATTTCACTCCTAAGTGTTTTAAGGAGAAAGAGGATGGTTTTGACCTTTTTGATGCTCTGGATGAGGAAGAAGCAGATAATGAACTGAAGGATAATGATGAACAAG
GATCTGGGTTTGATTCTAAAGATTCTTCTGATGGTGATAACCCTTTGGCTCATGATTTCCTCAAAGGAAGTGACAAAGGGATAATATTTGCAAATGAAACTAAAGCACAA
AGATTGAAGTCACTTATTGCAAATTTGCATCAGATGAGAATGACAAATATTGTTGTCTGCAAATATGATGGGAAGGAGATGTTAGATGAACTTTCACAGCAGCACAGATG
GTGGTTAGCGACAAACAAGGATGGGACGTTCGGTGGTAAGCGGATGAACGGGAACGAAGATGGGAATGGTGGTGAGCGGTGCGGCGCAGACACGATGGAGAAGGGGCGTT
CGGGGACGACGTTGATGCTGGAGGTCATGGGTTGTCTTGGTATTTGGTTTGATTATAGGTTAAAAACTCCCTCCTTAGTCGTAGTCCTTGCCGTGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTATCTCATCCACAGCGTCGACCGCTATCCATTCCGCACCACGAGAGCCCCACGGTCGTTCAGATCGGACCAACCCACCGTCGCACGCCACCCATCGTCGTTCAGA
TCTTCAACGCGACACCACACCATATCACCGCACATTCAGATCTACAACACTCTGCCGCACCATGTCGCTGCACCACACCGCCACACGTTCAGATCTGCAACGCGACACCA
TCCATGCTGTCGCACGCCACTATCGTTGTTTAGATCTGTCACACGAATGCCACCTACACTGCCGCAACACCGTCCGTCCAAATGTGAGCCTGTCGTTCAGATCTGTCTGC
CCGCAACCCCACCGTCGTTTAGATCCGATCAACGCTAAAAGGGCATTGCTCGTGGAGTTGGCCTCAATTAGAGATCTTTCTAATGCTCTATTGAAAAGGAAGAAGAAGGA
CGAACATTTCACTCCTAAGTGTTTTAAGGAGAAAGAGGATGGTTTTGACCTTTTTGATGCTCTGGATGAGGAAGAAGCAGATAATGAACTGAAGGATAATGATGAACAAG
GATCTGGGTTTGATTCTAAAGATTCTTCTGATGGTGATAACCCTTTGGCTCATGATTTCCTCAAAGGAAGTGACAAAGGGATAATATTTGCAAATGAAACTAAAGCACAA
AGATTGAAGTCACTTATTGCAAATTTGCATCAGATGAGAATGACAAATATTGTTGTCTGCAAATATGATGGGAAGGAGATGTTAGATGAACTTTCACAGCAGCACAGATG
GTGGTTAGCGACAAACAAGGATGGGACGTTCGGTGGTAAGCGGATGAACGGGAACGAAGATGGGAATGGTGGTGAGCGGTGCGGCGCAGACACGATGGAGAAGGGGCGTT
CGGGGACGACGTTGATGCTGGAGGTCATGGGTTGTCTTGGTATTTGGTTTGATTATAGGTTAAAAACTCCCTCCTTAGTCGTAGTCCTTGCCGTGAAGTGA
Protein sequenceShow/hide protein sequence
MLISSTASTAIHSAPREPHGRSDRTNPPSHATHRRSDLQRDTTPYHRTFRSTTLCRTMSLHHTATRSDLQRDTIHAVARHYRCLDLSHECHLHCRNTVRPNVSLSFRSVC
PQPHRRLDPINAKRALLVELASIRDLSNALLKRKKKDEHFTPKCFKEKEDGFDLFDALDEEEADNELKDNDEQGSGFDSKDSSDGDNPLAHDFLKGSDKGIIFANETKAQ
RLKSLIANLHQMRMTNIVVCKYDGKEMLDELSQQHRWWLATNKDGTFGGKRMNGNEDGNGGERCGADTMEKGRSGTTLMLEVMGCLGIWFDYRLKTPSLVVVLAVK