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PI0001217 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001217
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:16253347..16254091
RNA-Seq ExpressionPI0001217
SyntenyPI0001217
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037854.1 retrotransposon protein [Cucumis melo var. makuwa]8.1e-5052.33Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P C GF WNDE KCI+AEK+++D+WVKSHP AKGLLNK FPHYD+L YVFG+DR + GR ETF +VGSN  AGY+ F A   +D +F  MYSQGL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR------------------------------GIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
        S D++M TR  ++ EGR                               IPEL+ +DR   MRI+MRN+D+MKAFLDVP  +K  YC +ILQ+N
Subjt:  SPDDIMGTRPSQLFEGR------------------------------GIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-4945.7Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P CSGF WNDE KCI+AEK+++D+WV+SHP AKGLLNK FPHYD+L YVF +D A GGR E+FADVGSN P GYD F A   +D +F  MYS+GL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK
        SPD++MGTR +++ EGR                                                           IPEL+ +DR R MRI++ N++DMK
Subjt:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK

Query:  AFLDVPGELKLDYCMVILQDN
        AFL+VP  +K  YC +IL++N
Subjt:  AFLDVPGELKLDYCMVILQDN

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-5249.77Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MRDP CSGF WNDE KCIIAEK+++D+WVKSHP AKGLLNK F HYD+L YVFG+DRA GGR E+FAD+GSN PAGYD F A    D +FP MYS GL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK
        SPDD+M TR +++ E R                                                           IPEL+ +DR R MRIIMRN+DDMK
Subjt:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK

Query:  AFLDVPGELKLDYCMVILQDN
        AFL VP  +K  YC +ILQ+N
Subjt:  AFLDVPGELKLDYCMVILQDN

TYK05687.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-5156.57Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P CSGF WNDE KCI+ EK+++D+WVKSHPTAKGLLNK FPHYD+L Y+FG+DRA+GGR ++F DVGSN    Y+ F A   +D  F  MYSQGL M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGRG------------IPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
        S D++MGTR + + E               IPEL+ +DR   MRI+MRN+DDMKAFL+VP  +K  YC  ILQ+N
Subjt:  SPDDIMGTRPSQLFEGRG------------IPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

TYK19659.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-5057.47Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        M  PMCSGF  NDE KCI+AEK+++D+WVKSHP  KGLLNK F HYD L YVFG+DRA GGR E+FADVGSN   GYD F      D +FP MYSQGL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMG-----------TRPSQLFEGRGIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
          DD+MG           TR   + +   IPEL+ +DR R MRI+MRN+DDMKAFL+VP  +K  YC +I Q+N
Subjt:  SPDDIMG-----------TRPSQLFEGRGIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein4.4e-4945.7Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P CSGF WNDE KCI+AEK+++D+WV+SHP AKGLLNK FPHYD+L YVF +D A GGR E+FADVGSN P GYD F A   +D +F  MYS+GL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK
        SPD++MGTR +++ EGR                                                           IPEL+ +DR R MRI++ N++DMK
Subjt:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK

Query:  AFLDVPGELKLDYCMVILQDN
        AFL+VP  +K  YC +IL++N
Subjt:  AFLDVPGELKLDYCMVILQDN

A0A5A7U4M2 Retrotransposon protein2.5e-5249.77Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MRDP CSGF WNDE KCIIAEK+++D+WVKSHP AKGLLNK F HYD+L YVFG+DRA GGR E+FAD+GSN PAGYD F A    D +FP MYS GL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK
        SPDD+M TR +++ E R                                                           IPEL+ +DR R MRIIMRN+DDMK
Subjt:  SPDDIMGTRPSQLFEGR----------------------------------------------------------GIPELSRLDRVRCMRIIMRNMDDMK

Query:  AFLDVPGELKLDYCMVILQDN
        AFL VP  +K  YC +ILQ+N
Subjt:  AFLDVPGELKLDYCMVILQDN

A0A5D3C1J4 Retrotransposon protein1.6e-5156.57Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P CSGF WNDE KCI+ EK+++D+WVKSHPTAKGLLNK FPHYD+L Y+FG+DRA+GGR ++F DVGSN    Y+ F A   +D  F  MYSQGL M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGRG------------IPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
        S D++MGTR + + E               IPEL+ +DR   MRI+MRN+DDMKAFL+VP  +K  YC  ILQ+N
Subjt:  SPDDIMGTRPSQLFEGRG------------IPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

A0A5D3CHG6 Retrotransposon protein3.9e-5052.33Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        MR P C GF WNDE KCI+AEK+++D+WVKSHP AKGLLNK FPHYD+L YVFG+DR + GR ETF +VGSN  AGY+ F A   +D +F  MYSQGL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMGTRPSQLFEGR------------------------------GIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
        S D++M TR  ++ EGR                               IPEL+ +DR   MRI+MRN+D+MKAFLDVP  +K  YC +ILQ+N
Subjt:  SPDDIMGTRPSQLFEGR------------------------------GIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

A0A5D3D7X4 Retrotransposon protein2.3e-5057.47Show/hide
Query:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM
        M  PMCSGF  NDE KCI+AEK+++D+WVKSHP  KGLLNK F HYD L YVFG+DRA GGR E+FADVGSN   GYD F      D +FP MYSQGL+M
Subjt:  MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDM

Query:  SPDDIMG-----------TRPSQLFEGRGIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN
          DD+MG           TR   + +   IPEL+ +DR R MRI+MRN+DDMKAFL+VP  +K  YC +I Q+N
Subjt:  SPDDIMG-----------TRPSQLFEGRGIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein8.5e-0532.08Show/hide
Query:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIG
        GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Subjt:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIG

AT2G24960.2 unknown protein4.8e-0833.33Show/hide
Query:  SGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIG
        +GFSW+     +IA+ D+++ ++++HP A+    K  P Y +LC++FG++ + G
Subjt:  SGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIG

AT4G02210.1 unknown protein1.5e-0631.91Show/hide
Query:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFG
        GF+W++E + + A+ +++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein1.5e-0631.91Show/hide
Query:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFG
        GF+W++E + + A+ +++ +++K+H  A+  + +P P+Y DLC + G
Subjt:  GFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGACCCGATGTGCAGTGGGTTCAGTTGGAATGATGAGCTGAAATGCATTATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCCAACCGCGAAGGG
CCTCCTAAACAAACCATTTCCCCATTACGACGACCTCTGCTACGTCTTTGGAAGAGATCGTGCAATAGGAGGTCGCGTTGAAACCTTTGCTGATGTTGGGTCGAATGTGC
CTGCAGGGTACGATGGATTTCCCGCTTATGACGGAAACGATGTGGAGTTCCCCACAATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGCACACGACCC
AGTCAGTTGTTTGAGGGTAGGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATAATGCGCAATATGGATGACATGAAAGCATTTCTAGACGT
ACCGGGTGAGCTTAAATTGGATTACTGCATGGTCATTCTCCAAGATAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGACCCGATGTGCAGTGGGTTCAGTTGGAATGATGAGCTGAAATGCATTATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCCAACCGCGAAGGG
CCTCCTAAACAAACCATTTCCCCATTACGACGACCTCTGCTACGTCTTTGGAAGAGATCGTGCAATAGGAGGTCGCGTTGAAACCTTTGCTGATGTTGGGTCGAATGTGC
CTGCAGGGTACGATGGATTTCCCGCTTATGACGGAAACGATGTGGAGTTCCCCACAATGTACAGTCAGGGACTGGACATGTCACCTGACGACATAATGGGCACACGACCC
AGTCAGTTGTTTGAGGGTAGGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATAATGCGCAATATGGATGACATGAAAGCATTTCTAGACGT
ACCGGGTGAGCTTAAATTGGATTACTGCATGGTCATTCTCCAAGATAACGCTTGA
Protein sequenceShow/hide protein sequence
MRDPMCSGFSWNDELKCIIAEKDLYDNWVKSHPTAKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPAGYDGFPAYDGNDVEFPTMYSQGLDMSPDDIMGTRP
SQLFEGRGIPELSRLDRVRCMRIIMRNMDDMKAFLDVPGELKLDYCMVILQDNA