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PI0001236 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0001236
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr01:19962495..19962911
RNA-Seq ExpressionPI0001236
SyntenyPI0001236
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033985.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.4e-2647.29Show/hide
Query:  PWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKGY
        PW +I K  DWFE +I W +N+G +LSFW +NW +  PL    P  Y +S+LQNA+VKEVWD       I+PRRPLNDRE   W  IK  LP +Y ++G 
Subjt:  PWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKGY

Query:  SKPLWKLNGNNIFSVASVKLSLYNGNPNS
         KP W+ + NN+++VAS K   +    NS
Subjt:  SKPLWKLNGNNIFSVASVKLSLYNGNPNS

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.8e-2642.96Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWDT------IDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++ + I WF + I W++N+GE++SFW +NW+  +PL +A PR + +S  +  SVKE W+       +   RPL D E N W+ IK  LP   PN+G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWDT------IDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
        + KPLW LN NNIF  ASVK ++    P S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-2642.96Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++   I WF + I W++N+GE++SFW +NW+  SPL +  PR + +S  +  SVK++W+       I   RPL D E+N W+ IK  LP   P++G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
         SKPLWKLN NNIF  AS+K  L   +  S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-2643.66Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++   I WF + I W++N+GE++SFW +NW+  SPL +A PR + +S  +  SVK++W+       I   RPL D E+N W+ IK  LP   P++G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
         SKPLWKLN NNIF  AS+K  L   +  S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

TYK19715.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.4e-2849.59Show/hide
Query:  KAPWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNK
        K+PW +I K  DWFE +I W  N+G +LSFW++NW +  PL    PR Y +S LQ A+VKEVWD       I+PRRPLNDRE+  W  IK  LP ++ N+
Subjt:  KAPWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNK

Query:  GYSKPLWKLNGNNIFSVASVK
        G SKP W+ + +N+++VAS K
Subjt:  GYSKPLWKLNGNNIFSVASVK

TrEMBL top hitse value%identityAlignment
A0A5A7SXS1 LINE-1 retrotransposable element ORF2 protein6.7e-2747.29Show/hide
Query:  PWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKGY
        PW +I K  DWFE +I W +N+G +LSFW +NW +  PL    P  Y +S+LQNA+VKEVWD       I+PRRPLNDRE   W  IK  LP +Y ++G 
Subjt:  PWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKGY

Query:  SKPLWKLNGNNIFSVASVKLSLYNGNPNS
         KP W+ + NN+++VAS K   +    NS
Subjt:  SKPLWKLNGNNIFSVASVKLSLYNGNPNS

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein8.8e-2742.96Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWDT------IDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++ + I WF + I W++N+GE++SFW +NW+  +PL +A PR + +S  +  SVKE W+       +   RPL D E N W+ IK  LP   PN+G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWDT------IDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
        + KPLW LN NNIF  ASVK ++    P S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.5e-2642.96Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++   I WF + I W++N+GE++SFW +NW+  SPL +  PR + +S  +  SVK++W+       I   RPL D E+N W+ IK  LP   P++G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
         SKPLWKLN NNIF  AS+K  L   +  S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.1e-2743.66Show/hide
Query:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG
        +PW+++   I WF + I W++N+GE++SFW +NW+  SPL +A PR + +S  +  SVK++W+       I   RPL D E+N W+ IK  LP   P++G
Subjt:  APWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNKG

Query:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL
         SKPLWKLN NNIF  AS+K  L   +  S  N    LYK L
Subjt:  YSKPLWKLNGNNIFSVASVKLSLYNGNPNSIQNPGSLLYKNL

A0A5D3D823 LINE-1 retrotransposable element ORF2 protein3.6e-2849.59Show/hide
Query:  KAPWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNK
        K+PW +I K  DWFE +I W  N+G +LSFW++NW +  PL    PR Y +S LQ A+VKEVWD       I+PRRPLNDRE+  W  IK  LP ++ N+
Subjt:  KAPWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWD------TIDPRRPLNDRERNGWNLIKRDLPPLYPNK

Query:  GYSKPLWKLNGNNIFSVASVK
        G SKP W+ + +N+++VAS K
Subjt:  GYSKPLWKLNGNNIFSVASVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTCCTTGGCGCTCCATTATCAAAGGTATTGACTGGTTTGAGAGACAAATAAAATGGGAAATAAACAATGGTGAAAACCTTTCTTTTTGGTACAACAATTGGAG
TGATAAAAGTCCTCTCTACATGGCTTTTCCTAGATTTTATGTTATCTCTCAACTTCAAAATGCTTCTGTGAAGGAGGTATGGGACACTATTGACCCAAGAAGGCCTTTAA
ATGACAGAGAAAGAAATGGTTGGAACCTTATTAAAAGAGATCTTCCTCCTTTATACCCAAACAAAGGCTACAGTAAACCCCTTTGGAAACTCAACGGAAACAACATTTTC
TCCGTTGCCTCTGTCAAATTGTCCTTATACAATGGCAACCCAAATAGCATCCAAAACCCTGGATCCCTCCTTTATAAAAATCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTCCTTGGCGCTCCATTATCAAAGGTATTGACTGGTTTGAGAGACAAATAAAATGGGAAATAAACAATGGTGAAAACCTTTCTTTTTGGTACAACAATTGGAG
TGATAAAAGTCCTCTCTACATGGCTTTTCCTAGATTTTATGTTATCTCTCAACTTCAAAATGCTTCTGTGAAGGAGGTATGGGACACTATTGACCCAAGAAGGCCTTTAA
ATGACAGAGAAAGAAATGGTTGGAACCTTATTAAAAGAGATCTTCCTCCTTTATACCCAAACAAAGGCTACAGTAAACCCCTTTGGAAACTCAACGGAAACAACATTTTC
TCCGTTGCCTCTGTCAAATTGTCCTTATACAATGGCAACCCAAATAGCATCCAAAACCCTGGATCCCTCCTTTATAAAAATCTATGA
Protein sequenceShow/hide protein sequence
MKAPWRSIIKGIDWFERQIKWEINNGENLSFWYNNWSDKSPLYMAFPRFYVISQLQNASVKEVWDTIDPRRPLNDRERNGWNLIKRDLPPLYPNKGYSKPLWKLNGNNIF
SVASVKLSLYNGNPNSIQNPGSLLYKNL